Table 1. Statistical summary of small RNA sequencing data and distribution of small RNAs with perfect match to the genome sequence of P. chrysogenum.

		Total reads			Unique reads (≥ 10 reads)
RNAs (15–36 nt)		RNA-Mix	∆ku70FRT2	∆dcl2∆dcl1	RNA-Mix	∆ku70FRT2	∆dcl2∆dcl1
Raw reads		46,240,082	52,144,415	65,660,252	122,018	113,603	104,922
Mapped reads[ 1 ]		39,188,594	45,134,231	57,721,023	89,096	77,035	67,428
Ratio		84.80%	86.60%	87.90%	73.01%	67.81%	64.26%
Protein-coding genes		16,171,567	16,249,031	20,055,379	38,337	35,173	26,558
	sense	11,612,935	10,975,391	13,497,944	29,659	27,835	24,798
	antisense	4,942,727	5,554,209	6,874,230	10,389	8,631	2,679
Exon		5,619,395	6,472,049	7,539,001	16,527	17,680	8,431
	sense	1,633,831	1,687,351	1,557,211	9,788	11,875	7,596
	antisense	4,009,410	4,799,719	5,984,778	7,043	6,020	865
Intron		10,569,963	9,777,092	12,504,834	21,702	17,439	18,022
	sense	9,996,408	9,276,048	11,918,300	19,744	15,839	17,085
	antisense	905,029	741,304	873,060	3,238	2,557	1,729
tRNA		6,128,717	6,746,039	8,779,724	5,062	4,133	4,363
	sense	6,126,353	6,745,245	8,779,649	5,025	4,123	4,363
	antisense	2,577	971	277	38	11	1
rRNA		22,659,643	29,792,848	39,201,820	43,143	34,808	39,639
	sense	22,652,991	29,780,783	39,201,243	43,051	34,639	39,626
	antisense	6,652	12,065	577	92	169	3
Intergenic		21,367,882	27,127,757	35,564,101	50,226	41,195	35,646

^[1] Perfectly mapped reads with more than one locus may occur in several categories as mapped reads.