Table 1.

ncRNA elements enriched for H3K4me3

ncRNA class	H3K4me3-enriched a	Total annotations	% enriched a
Predicted snoRNAs	31 (59)	175	17.7 (33.7)
Predicted miRNAs	3 (4)	153	2.0 (2.6)
Known miRNAs	1 (2)	60	1.7 (3.3)
Predicted tRNAs	3 (8)	508	0.6 (1.57)
Predicted antisense RNAs	0 (0)	19	0.0 (0.0)
Predicted rRNAs	0 (0)	269	0.0 (0.0)
Predicted spliceosomal snRNA	0 (0)	125	0.0 (0.0)
Predicted sRNAs	0 (0)	80	0.0 (0.0)

^aExcludes H3K4me3 peaks overlapping with annotated protein-coding genes. ncRNAs overlapping peaks that also overlap genes are indicated in parenthesis.

Putative targets of H3K4me3-enriched miRNAs are indicated in Additional file 3: Table S3.