Table 3.

Distance analysis among phylogenic trees constructed based on maximum-likelihood and Bayesian MCMC methods

Phylogenetic analysis	vs CS		vs H37Rv
	Unrooted	Rooted	Unrooted	Rooted
PhyML(aLRT)	2.88E-01	2.88E-01	5.95E-01	5.95E-01
PhyML(consel selected)	2.89E-01	2.89E-01	5.96E-01	5.96E-01
BEAST	1.68E + 03	1.20E + 03	2.61E + 03	1.91E + 03

To quantify the branch score distance between trees, Robinson and Fould test [41] implemented in treedist in the Phylip package was utilized. Both of unrooted and rooted scores were calculated.