Table 1. Number of sites with overestimation of REF or ALT allele frequency in each HLA locus ( > 0.1 in 2 or more populations).
A | B | C | DQB1 | DRB1 | |
---|---|---|---|---|---|
REF | 11 | 30 | 6 | 22 | 11 |
ALT | 3 | 2 | 3 | 2 | 11 |
Genomic coordinates of those sites are given in Table S4. HLA, human leukocyte antigen; REF, reference; ALT, alternative.