Table 2.

The top 10 markers most highly associated with clutch size in the repeated-measures GWAS. SNP name, chromosome number, chromosomal position, reference allele, coded allele and allele frequency for the reference allele along with estimated effect size, standard error, p-value corrected for genomic inflation and call rate. The genome-wide significant marker is highlighted in bold and the suggestive markers in italics.

SNP name	chromosome number	chromosome position	major allele	minor allele	minor allele frequency	effect size	s.e.	p-value	call rate
Chr18_N00072:1137698	18	8431907	A	G	0.03	−0.819	0.167	7.23 × 10−7	1.00
Chr26_N00075 : 2292331	26	4868665	A	G	0.41	−0.277	0.063	1.13 × 10−5	1.00
Chr9_N00007 : 7983448	9	15102041	A	G	0.32	0.289	0.068	1.47 × 10−5	1.00
Chr18_N00072 : 1130347	18	8424558	G	A	0.08	−0.458	0.109	2.96 × 10−5	1.00
Chr7_N00016 : 11337254	7	36319720	G	A	0.24	−0.285	0.069	4.08 × 10−5	1.00
Chr18_N00072 : 1134699	18	8428909	G	A	0.04	−0.630	0.155	5.60 × 10−5	1.00
Chr18_N00068 : 3727934	18	6183407	G	A	0.08	−0.389	0.100	1.18 × 10−4	1.00
Chr21_N00232 : 274271	21	467752	G	A	0.12	0.399	0.104	1.34 × 10−4	1.00
Chr11_N00156 : 109507	11	90045	A	G	0.07	−0.426	0.114	1.99 × 10−4	1.00
Chr4_N00190 : 864394	4	71299723	A	G	0.21	−0.267	0.072	2.11 × 10−4	1.00