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. Author manuscript; available in PMC: 2016 May 7.
Published in final edited form as: Cell. 2015 May 7;161(4):737–749. doi: 10.1016/j.cell.2015.03.031

Table I. Enumeration of memory P14 CD8 T cells by cell isolation and flow cytometry and QIM.

5×104 naїve Thy1.1+ P14 CD8 T cells were transferred to C57BI/6J mice, which were infected one day later with 2×105 LCMV Armstrong i.p. 120-150 days later, 3min prior to sacrifice mice were injected i.v. with α-CD8α antibody to discriminate the blood and marginated pool (i.v.+) from parenchymal P14 (i.v.-). Bold values indicate the average number of P14 or total nucleated cells per tissue derived from cell isolation and flow cytometry or QIM. Kidney accounts for both kidneys, salivary gland reports for both lobes, uterus includes both uterine horns, and mandibular lymph node enumerates a Single unpaired lymph node. Peripheral blood enumeration is extrapolated to 1.74mL of blood, based on average body weight of mice used in this study. Data from 6 or more mice. Underlined italic numbers indicate number of nucleated cells (± SD) as determined by DNA extraction. BD= below detection, NA= not available, LP= lamina propria, IEL= intraepithelial lymphocytes, M.E.= muscularis externa, ILF= isolated lymphoid follicle.

Tissue Fold Difference Flow Cytometry QIM QIM & DNA
QIM/Flow Total P14 ×104±SD ×104 % of total P14 i.v.- Total P14 ×104±SD ×104 % of total P14 i.v.- P14 ×103±SD ×103 Per 106 nuclei Total Nucleated Cells ×106±SD×106
Spleen (White Pulp) 1.92 195 ±79.7 66.6 375 ±142 82.1 25.7 ±9.41 178 ±10.7237 ±30.2
Spleen i.v.+ (Red Pulp) 0.84 93.2 ±32.7 78.5 ±20.5
Mandibular lymph node 1.19 5.31 ±2.00 97.7 6.32 ±2.83 BD 20.7 ±7.74 2.98 ±0.4811.5 ±0.705
Thymus 9.26 1.96 ±1.11 96.6 99.7% IV-= 18.1 ±5.61 99.7 2.86 ±0.32 77.3 ±25.7
Liver 6.13 6.12 ±2.05 14.8 37.5 ±22.0 16.9 5.42 ±1.17 378 ±29.91180±973
Liver i.v.+ 4.58 37.1 ±75.9 170 ±36.1
Lung 69.1 0.31 ±0.24 9.06 21.3±15.3 25 3.36 ±1.27 282 ±45.2
Lung i.v.+ 13.8 5.43 ±6.42 75.2±53.7
Kidney 27.2 0.945 ±0.64 46.3 25.4 ±8.27 83.1 1.99 ±0.697 157 ±25.0
Kidney i.v.+ 5.02 1.03 ±0.76 5.17 ±1.95
Pancreas 13.3 2.87 ±2.11 94.8 99.7% IV-= 37.9 ±9.19 99.7 4.37 ±0.95 86.9 ±11.5
Salivary (serous) 13.1 1.65 ±0.59 99.8 21.6 ±5.61 BD 10.3 ±2.64 21.2 ±2.58
Salivary (mucous) NA NA NA 7.81 ±2.35 BD 5.43 ±1.41 14.4 ±1.42
Uterus 69.0 0.603 ±0.41 90.2 25.6 ±4.61 BD 3.51 ±0.958 75.7 ±15.885.4 ±26.2
Cervix/Vagina 16.0 ±8.39 BD 2.95 ±1.02 52.4 ±14.245.1 ±19.8
SI (IEL) 6.10 3.81 ±2.02 99.8 23.2 ±12.7 BD 3.24 ±0.91 328 ±92.9517 ±176
SI (LP) 18.6 4.06 ±1.70 99.1 74.3 ± 22.5 BD
SI (muscle) 1.04 ±1.05 BD
LI (IEL) 41.3 0.034 ±0.018 84.10 1.39 ±0.75 BD 0.81 ±0.04 122 ±12.3
LI (LP) 68.1 0.12 ±0.073 82.46 7.59 ±3.65 BD
LI (ILF) 0.51 ±0.63 BD
Stomach(IEL) 17.5 0.35E ±0.45 91.9 6.17 ±2.27 BD 2.91 ±0.92 118 ±14.9113 ±17.4
Stomach (LP) 122 0.22 ±0.157 95.1 20.0 ±7.22 BD
Stomach (Submucosa) Stomach(M.E) 3.05 ± 0.92 BD
3.91 ±1.12 BD
Peripheral Blood NA 13.4 ±6.33 100 NA NA NA NA