Table 2. List of nucleotide alteration found in the Oca2 gene of mouse strains with the original Oca2p allele.
| RGCm38 coodinate |
Position in the gene |
Reference | NCT | NZW/ NSlc |
SJL/J | 129X1/ SvJJmsSlc |
Effect | SNP reference ID |
|---|---|---|---|---|---|---|---|---|
| 56,239,117 | Upstream | G | A | A | A | A | rs32975435 | |
| 56,239,155 | Upstream | C | T | T | T | T | rs32975437 | |
| 56,239,216 | Upstream | T | G | G | G | G | rs32975438 | |
| 56,239,238 | Upstream | T | C | C | C | C | rs46887862 | |
| 56,239,239 | Upstream | T | A | A | A | A | rs50866175 | |
| 56,239,254 | Upstream | G | T | T | T | T | rs50711255 | |
| 56,239,277 | Upstream | T | C | C | C | C | rs32975439 | |
| 56,239,299 | Upstream | G | A | A | A | A | rs108518501 | |
| 56,239,318 | Upstream | A | G | G | G | G | rs32975440 | |
| 56,239,329 | Upstream | A | G | G | G | G | rs32975441 | |
| 56,239,404 | Upstream | G | C | C | C | C | rs32975443 | |
| 56,239,413 | Upstream | T | C | C | C | C | rs49155013 | |
| 56,239,448 | Upstream | A | C | C | C | C | rs32976114 | |
| 56,239,488 | Upstream | G | A | A | A | A | rs32976116 | |
| 56,239,538 | Upstream | C | T | T | T | T | rs32976117 | |
| 56,239,604 | Upstream | T | A | A | A | A | rs50836782 | |
| 56,239,607 | Upstream | A | G | G | G | G | rs50507765 | |
| 56,239,626 | Upstream | T | C | C | C | C | rs32976118 | |
| 56,239,800 | exon 1 | G | A | A | A | A | non-coding | rs32976120 |
| 56,239,830 | exon 1 | T | G | G | G | G | non-coding | rs32976121 |
| 56,239,850 | exon 1 | T | C | C | C | C | non-coding | rs32976122 |
| 56,254,868 | exon 2 | C | T | T | T | T | silent | rs32975605 |
| 56,254,910 | exon 2 | T | C | C | C | C | silent | rs32065217 |
| 56,280,859 | exon 4 | T | A | A | A | A | silent | rs51221903 |
| 56,293,785 | exon 7 | A | T | T | T | T | silent | rs32980939 |
| 56,293,847 | exon 7 | C | T | T | T | T | missense (p.A256V) | rs32980940 |
| 56,293,864 | exon 7 | C | T | T | T | T | nonsense (p.R262X) | rs32980941 |
| 56,295,441 | exon 8 | C | G | G | G | G | missense (p.L266V) | rs31110637 |
| 56,295,446 | exon 8 | C | T | T | T | T | silent | rs31471555 |
| 56,295,506 | exon 8 | T | C | C | C | C | silent | rs32976441 |
| 56,297,217 | exon 9 | A | C | C | C | C | silent | rs31936191 |
| 56,324,663 | exon 14 | A | G | G | G | G | silent | rs50144561 |
| 56,327,313 | exon 15 | G | C | C | C | C | silent | rs50712907 |
| 56,328,831 | exon 16 | T | C | C | C | C | silent | rs32977966 |
| 56,413,733 | exon 20 | A | T | T | T | T | silent | rs32979629 |
| 56,429,368 | exon 23 | A | C | C | C | C | missense (p.K794Q) | rs31090430 |
| 56,535,958 | exon 24 | G | A | A | A | A | missense (p.V811M) | rs32985345 |