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. Author manuscript; available in PMC: 2015 May 12.
Published in final edited form as: IEEE/ACM Trans Comput Biol Bioinform. 2011 Sep-Oct;8(5):1247–1257. doi: 10.1109/TCBB.2010.104

Fig. 10.

Fig. 10

Predicted structure of P4/P6 (right), compared to the crystallographically obtained structure (left). To generate the predicted structure, sterics were treated with the SelectedAtoms scheme. The temperature was 10 K. All Amber99 force field terms were turned off except for bond stretching, which was scaled to 0.1 of its default value. The RNABuilder base-wise forces were scaled by a factor of 20.