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. Author manuscript; available in PMC: 2015 May 12.
Published in final edited form as: Hum Pathol. 2013 Nov 12;45(4):701–708. doi: 10.1016/j.humpath.2013.11.001

Table 3.

Genetic Alterations Identified Through NGS (N=15)

GENE Alterations (With allele frequency or copy number)
TP53 V274F (10%)
R282G (50%)
R213* (29%)
Y220C (2%)
R342* (24%)
C141* (21%)
Splice site 559+1G>T (21%)
F109V (46%)
V272L
STK11 R86* (11%)
E120* (15%)
K62fs*98 (6%)
CCNE1 Amplification (copy no 11×)
Amplification (copy no 13×)
MDM2 Amplification (copy no 6×)
Amplification (copy no 16×)
MYC Amplification (copy no 12×)
Amplification (copy no 7×)
RICTOR Amplification (copy no 12×)
Amplification (copy no 7×)
APC S2113fs*25 (21%)
ARID1A G284fs*78 (18%)
AURKA S398L (48%)
CDKN2A Truncation - exon 1
CDKN2A/B Loss
Loss
CRKL Amplification (copy no 12×)
FGF10 Amplification (copy no 7×)
FGFR3-TACC FGFR3-TACC3 fusion, Amplification (copy no 8×)
KRAS G12C, 3%
MCL1 Amplification (copy no 8×)
Amplification (copy no 8×)
PRKAR1A R97* (33%)
SMAD4 Truncation
SMARCA4 D558fs*6 (26%)
TSC2 Loss
BAP1 splice site 438-1delGTTTTTCCCC AG, 10%
1delGTTTTTCCCC AG, 10%
ERBB2 Amplification (copy no 20×)
Amplification (copy no 9×)
PIK3CA Amplification (copy no 7×)
ZNF703 Amplification (copy no 7×)