Fig 6. Differential expression scatter plots (RPA mode).

log₂ fold change values for differential expression estimated using different RNA-seq analysis methods plotted against corresponding microarray log₂ fold change values. The figures show 60% of most highly expressed genes. Only plots for a single sample pair in each data set are shown. The top row shows the fold changes between the kidney and liver samples from the Marioni data set, while the bottom row shows changes between samples 2803 and 2805 from the LAML data set. The legend contains Pearson correlation (r) and the number of genes (n).