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. 2015 May 11;5:9645. doi: 10.1038/srep09645

Table 4. Selected genes with altered expression in leaves of aphid-infested cucumber plants.

functional group gene Gene annotation TPM (transcript per million clean tags)
0 T2 T4 T6 T8
signal transduction              
  Cucsa.153420.1 peroxidase 2 75.23 98.03 267.03 270.20 232.78
  Cucsa.195750.1 peroxidase 4 0.01 0.36 0.01 9.70 1.04
  Cucsa.229270.1 lignin-forming anionic peroxidase 0.01 0.01 0.01 3.53 0.01
  Cucsa.104600.1 L-ascorbate oxidase 4.48 2.32 15.96 78.66 64.20
  Cucsa.340760.1 respiratory burst oxidase homolog protein C 73.44 105.52 198.45 328.93 419.28
  Cucsa.385970.1 phenylalanine ammonia-lyase 98.69 83.24 41.25 23.28 4.52
  Cucsa.124480.1 phenylalanine ammonia-lyase 10.57 12.30 39.04 71.96 142.66
  Cucsa.164370.1 calcium-dependent protein kinase 7 11.82 22.99 76.90 157.85 132.22
  Cucsa.157410.1 calcium-binding protein CML19 6.81 16.75 78.26 31.22 123.52
  Cucsa.366800.1 calmodulin-like protein 1 23.64 54.18 20.54 16.75 7.31
  Cucsa.282040.1 WRKY protein 35.11 57.57 47.02 201.06 88.73
  Cucsa.259110.1 WRKY transcription factor 30 77.92 163.09 616.22 1497.01 615.87
  Cucsa.148640.1 WRKY transcription factor 42 5.73 2.32 8.15 38.10 25.40
  Cucsa.250350.1 WRKY transcription factor 51 0.36 0.01 0.01 6.17 3.31
  Cucsa.101530.1 WRKY transcription factor 51 0.01 0.01 0.01 2.12 0.52
Plant-pathogen interaction              
  Cucsa.286250.1 cysteine-rich receptor-like protein kinase 3 39.94 23.88 47.53 229.28 137.44
  Cucsa.218960.1 pathogenesis-related protein 1 8.42 8.20 39.21 61.20 12.53
  Cucsa.218550.1 L-type lectin-domain containing receptor kinase IX.1 0.72 0.01 2.89 21.52 9.39
  Cucsa.283380.1 leucine-rich repeat receptor-like protein kinase At1g68400 7.52 14.62 9.17 4.41 2.96
  Cucsa.176670.1 lectin-domain containing receptor kinase VI.4 0.72 0.36 1.53 9.88 9.57
  Cucsa.175650.1 L-type lectin-domain containing receptor kinase S.4 0.90 0.01 0.01 4.06 1.74
  Cucsa.176660.1 L-type lectin-domain containing receptor kinase VI.1 0.01 0.01 1.02 6.70 2.26
  Cucsa.063170.1 probable receptor-like protein kinase At5g20050 5.91 1.07 0.34 6.17 6.61
  Cucsa.057870.1 probable LRR receptor-like serine/threonine-protein kinase At1g53440 5.02 3.92 2.89 50.79 10.96
  Cucsa.091710.1 TIR-NBS-LRR-AAA+ATPase class resistance protein 0.54 0.01 0.01 5.64 4.70
  Cucsa.101540.1 LRR receptor-like serine/threonine-protein kinase At5g59680 1.43 0.53 1.19 5.29 1.91
  Cucsa.104600.1 L-ascorbate oxidase 4.48 2.32 15.96 78.66 64.20
  Cucsa.254810.1 proline-rich receptor 23.64 14.26 30.90 181.66 71.50
  Cucsa.086080.1 gibberellin 2-beta-dioxygenase 8 17.73 32.44 12.90 5.11 18.79
  Cucsa.201850.1 Acidic endochitinase 0.01 0.53 0.85 8.11 35.84
Flavonoid biosynthesis              
  Cucsa.302230.1 flavonoid 3',5'-hydroxylase 24.90 43.31 17.15 9.17 7.31
  Cucsa.143940.1 chalcone--flavonone isomerase 41.91 64.52 29.54 7.23 6.09
  Cucsa.120730.1 naringenin, 2-oxoglutarate 3-dioxygenase 20.42 33.15 24.45 14.11 2.96
  Cucsa.155940.1 chalcone synthase 2 376.32 873.00 291.98 171.25 14.09
  Cucsa.193360.1 naringenin, 2-oxoglutarate 3-dioxygenase 0.54 0.01 3.23 135.63 83.68
  Cucsa.383730.1 -aminocyclopropane-1-carboxylate oxidase homolog 6 127.89 161.13 1353.48 1003.18 2837.20
  Cucsa.102760.1 isoflavone 2'-hydroxylase 6.99 2.85 22.58 11.82 4.87
Amino acid metabolism              
  Cucsa.117200.1 threonine synthase, chloroplastic 14.33 7.13 14.60 11.46 28.36
  Cucsa.240920.1 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase 58.21 114.43 60.77 41.62 60.89
  Cucsa.055380.1 serine--glyoxylate aminotransferase 306.11 315.83 561.90 439.51 252.79
  Cucsa.026460.1 glutamate decarboxylase 4 0.36 0.01 2.21 4.59 2.26
  Cucsa.086150.1 cysteine-rich receptor-like protein kinase 25 0.01 0.01 0.51 3.70 2.26
  Cucsa.124990.1 threonine dehydratase biosynthetic 0.36 0.01 0.01 0.01 4.70
sugar metabolism              
  Cucsa.286150.1 polygalacturonase At1g48100 7.16 15.86 5.09 0.01 0.01
  Cucsa.078110.1 pectinesterase/pectinesterase inhibitor U1 22.21 12.48 42.44 11.46 53.06
  Cucsa.201150.1 probable pectinesterase 53 138.64 195.70 31.58 7.94 4.00
  Cucsa.273150.1 UDP-glucose 6-dehydrogenase 127.35 58.11 138.01 548.68 846.22
  Cucsa.228210.1 beta-galactosidase 3 109.44 198.91 66.38 56.08 29.23
  Cucsa.107160.1 6-phosphogluconate dehydrogenase, decarboxylating 145.26 127.97 70.79 91.71 57.76