Table 1.
Epigenetic studies using somatic tissues of Arabidopsis thaliana.
| Tissue | Marks | References |
|---|---|---|
| Seedlings (10 days old) | 5mC(r), H2Bub(a), H3K27me1(r), H3K27me3(r), H3K36me3(a), H3K4me2(a/r), H3K4me3(a), H3K9me2(r), H3K9me3(a) | Turck et al., 2007; Zhang et al., 2007; Roudier et al., 2011 |
| Seedlings (3 weeks old) | H3K4me1(a/r), H3K4me2(a/r), H3K4me3(a) | Zhang et al., 2009 |
| Seedlings (5 days old, dark-grown) | H3K27ac(a), H3K27me3(r), H3K9ac(a), H3K9me3(a) | Charron et al., 2009 |
| Leaves | H3K27me3(r), H3.3.TTS(a)*, H3.3.TTS.Promoter(a)*, H3.3.Promoter(a/r)* | Lafos et al., 2011; Shu et al., 2014 |
| Shoot apical meristem | H3K27me3(r) | Lafos et al., 2011 |
| Shoots (3 weeks old) | H3K9me2(r) | Bernatavichute et al., 2008 |
| Roots (10 days old) | H3K27me3(r), H3K4me3(a) | Roudier et al., 2011 |
| Aerial tissue (2 weeks old) | H3K4me2(a/r), H3K4me3(a), H3K9Ac(a), H3K9me2(r), H3K18Ac(a), H3K27me1(r), H3K27me3(r), H3K36me2(a), H3K36me3(a), 5mC(r) | Luo et al., 2012 |
*
Genes with H3.3 mark were grouped by the position of H3.3: H3.3.TTS, H3.3 near transcription termination sites (TTS); H3.3.Promoter, H3.3 in promoter; H3.3.TTS.Promoter, H3.3 near TTS and in promoter.