Table 1.
Stage I: discovery data set* |
Stage II: expanded data set* |
||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
MAF |
MAF |
||||||||||
Chr | SNP | Base pair | Gene symbol | Controls N=1321 |
Cases N=112 |
OR (95% CI) | p Value | Controls N=1830 |
Cases N=225 |
OR (95% CI) | p Value |
1 | rs10489478 | 176 566 350 | PAPPA2 | 0.18 | 0.09 | 0.41 (0.25 to 0.66) | 2.67×10−4 | 0.18 | 0.11 | 0.47 (0.34 to 0.65) | 4.70×10−6 |
1 | rs10913237 | 176 630 416 | PAPPA2 | 0.18 | 0.09 | 0.39 (0.24 to 0.64) | 1.85×10−4 | 0.19 | 0.11 | 0.46 (0.33 to 0.63) | 2.47×10−6 |
1 | rs10454444 | 176 649 181 | PAPPA2 | 0.18 | 0.09 | 0.39 (0.24 to 0.64)1 | 1.81×10−4 | 0.19 | 0.11 | 0.46 (0.33 to 0.63) | 2.43×10−6 |
2 | rs10 200 850 | 240 234 901 | HDAC4 | 0.06 | 0.13 | 2.22 (1.42 to 3.46) | 4.34×10−4 | 0.06 | 0.11 | 2.23 (1.57 to 3.17) | 8.18×10−6 |
4 | rs4834703 | 119 691 624 | SEC24D | 0.09 | 0.18 | 2.27 (1.54 to 3.34) | 3.13×10−5 | 0.09 | 0.16 | 1.98 (1.47 to 2.66) | 6.80×10−6 |
4 | rs6822035 | 119 710 421 | SEC24D | 0.29 | 0.40 | 1.73 (1.29 to 2.33) | 2.59×10−4 | 0.28 | 0.36 | 1.65 (1.32 to 2.05) | 9.55×10−6 |
12 | rs2303970 | 74 471 340 | TRHDE|LOC552889 | 0.48 | 0.35 | 0.58 (0.43 to 0.78) | 3.51×10−4 | 0.48 | 0.36 | 0.62 (0.50 to 0.76) | 8.89×10−6 |
13 | rs609418 | 37 417 427 | RFXAP | SMAD9 | 0.25 | 0.35 | 1.73 (1.28 to 2.33) | 3.14×10−4 | 0.25 | 0.33 | 1.67 (1.34 to 2.09) | 5.81×10−6 |
*Adjusted for clinical characteristics including extracardiac arteriopathy, recent myocardial infarction, procedure other than CABG only, year of surgery, number of diseased vessels and aortic cross-clamp time.
HDAC4, histone deacetylase-4; PAPPA2, pregnancy-associated plasma protein A2; RFXAP, regulatory factor X-associated protein; SEC24D, SEC24-related protein D; SMAD9, mother against decapentaplegic homolog 9; TRHDE, thyrotropin-releasing hormone-degrading ectoenzyme; intergenic region is expressed by two franking genes with ‘|’ in between.
CABG, coronary artery bypass grafting; Chr, chromosome; MAF, minor allele frequency (based on the discovery data set); SNP, single nucleotide polymorphisms.