Table 1.
Virus- and host-aligning RNA-seq reads in AIDS-related lymphoma patient cohort
| ID | Diagnosis | Storage | EBV status | Total reads | Unique human reads | Unique EBV reads |
|---|---|---|---|---|---|---|
| LY002 | DLBCL | Frozen | EBV− | 40 642 580 | 4 179 804 | 4 |
| LY003 | BL | Frozen | EBV+ | 58 461 328 | 6 082 519 | 1 094 |
| LY004 | DLBCL | Frozen | EBV− | 45 676 046 | 14 737 943 | 0 |
| LY005 | Follicular lymphoma | Frozen | EBV− | 66 222 036 | 19 694 654 | 0 |
| LY006 | Follicular lymphoma | Frozen | EBV− | 51 384 920 | 6 113 426 | 0 |
| LY007 | DLBCL | Frozen | EBV− | 45 299 480 | 5 195 300 | 0 |
| LY008 | DLBCL | FFPE | EBV− | 70 393 682 | 21 924 559 | 8 |
| LY009 | DLBCL | FFPE | EBV− | 74 302 054 | 24 897 813 | 971 |
| LY010 | DLBCL | FFPE | EBV− | 80 747 336 | 22 747 406 | 0 |
| LY011 | DLBCL | FFPE | EBV− | 79 507 540 | 28 720 368 | 0 |
| LY013 | DLBCL | FFPE | EBV+ | 65 902 794 | 12 861 869 | 114 938 |
| LY014 | DLBCL | Frozen | EBV− | 107 114 152 | 6 542 704 | 0 |
| LY015 | DLBCL | Frozen | EBV− | 165 832 378 | 9 712 379 | 0 |
| LY016 | DLBCL | Frozen | EBV− | 139 967 864 | 7 754 150 | 2 |
| LY017 | DLBCL | Frozen | EBV− | 66 708 934 | 8 132 534 | 0 |
| LY018 | DLBCL | Frozen | EBV+ | 62 481 036 | 8 862 120 | 1 286 |
| LY019 | DLBCL | Frozen | EBV− | 64 447 628 | 4 411 390 | 20 |
| LY020 | DLBCL | Frozen | EBV− | 62 411 645 | 9 436 092 | 512 |
| LY021 | DLBCL | Frozen | EBV− | 48 797 764 | 9 209 151 | 50 |
| LY022 | DLBCL | Frozen | EBV− | 81 856 928 | 9 976 478 | 78 |
| LY023 | DLBCL | Frozen | EBV− | 61 246 428 | 12 269 534 | 81 |
| LY024 | BL | FFPE | EBV− | 52 597 350 | 19 920 974 | 36 |
| LY029 | PBL | FFPE | EBV+ | 52 770 210 | 30 181 777 | 23 584 |
| LY030 | BL | FFPE | EBV+ | 16 461 068 | 10 901 688 | 66 897 |
| LY031 | DLBCL | FFPE | EBV+ | 63 740 374 | 16 484 786 | 7 318 |
Columns shown are internal ID, histological subclass diagnosis, sample storage, EBV EBER ISH status, total RNA-seq reads, and number of stringently unique reads that align to human and EBV.