TABLE 2.
Evaluation of PhyResSE regarding lineage-defining mutations
| No. of strains | Genotype determined: |
|
|---|---|---|
| Conventionallya | By WGS | |
| 4 | Beijing | Beijing |
| 4 | Cameroon | Cameroon |
| 4 | EAIb | EAI |
| 1 | Ghana | Ghana |
| 12 | Haarlem | Haarlem |
| 15 | LAMc | LAM |
| 3 | S type | S type |
| 6 | West African 1 | West African 1 |
| 14 | West African 2 | West African 2 |
| 1 | None | Haarlem |
| 10 | None | Euro-American superlineage |
| 7 | Sierra Leone 1 | Euro-American superlineage |
| 9 | Sierra Leone 2 | Euro-American superlineage |
| 2 | X type | Euro-American superlineage |
a
By IS6110 fingerprinting, spoligotyping, and 24-locus MIRU-VNTR typing.
b
EAI, East African Indian.
c
LAM, Latin American Mediterranean.