TABLE 1.
Oligonucleotides used for the study of gene expression in this study
Species | Gene | Primer directiona | Primer sequence (5′ to 3′) | Amplicon size (bp) | Melting temp (°C) | Annealing temp (°C) |
---|---|---|---|---|---|---|
E. coli and K. pneumoniae | acrB | F | TTTGCGTGGGTGATCGC | 192 | 54 | 50 |
R | GTTATCGATACCGTTCATA | 52 | ||||
E. coli | acrF | F | TGGCCATTATYCTGATGA | 179 | 50 | 48 |
R | GTTATCGATACCGTTCATA | 52 | ||||
K. pneumoniae | F | TTCATCGACCGGTCTTCG | 208 | 56 | 52 | |
R | AGATTGTCGATGCCGTTC | 54 | ||||
E. coli and K. pneumoniae | acrD | F | GTGCTGGCAATCCTGTT | 181 | 52 | 50 |
R | TATCGAGGCCGGTCATAT | 54 | ||||
E. coli | marA | F | TCATAGCATTTTGGACTGG | 172 | 54 | 52 |
R | TTGCGCGATTTCCGTCAT | 54 | ||||
K. pneumoniae | F | AGCGCTCCGGTTACTCTAA | 171 | 58 | 56 | |
R | GCTGCGACTCGAAACCATA | 58 | ||||
E. coli | soxS | F | ATTGACCAGCCGCTTAACAT | 197 | 58 | 54 |
R | ACATAACCCAGGTCCATTG | 56 | ||||
K. pneumoniae | F | TAGTCGCCAGAAAGTCAGG | 190 | 58 | ||
R | GAGAAGGTTTGCTGCGAGA | 56 | ||||
K. pneumoniae | ramA | F | CTGCAACGGCTGTTTTTACA | 180 | 58 | 56 |
R | ATTGAAGGTCCGGGTGAAG | 58 | ||||
E. coli | gapA | F | GCTAACCTGAAATGGGACG | 189 | 58 | 56 |
R | GTCCTGGCCAGCATATTTG | 58 | ||||
K. pneumoniae | gapA | F | GAAAGGCGTTCTGGGTTAC | 184 | 58 | |
R | GATGTGGGCAATCAGATCC | 58 |
F, forward; R, reverse.