Table 7.
SNP association analysis in cow population
| Brahman | Tropical Composite | |||||||
|---|---|---|---|---|---|---|---|---|
| Trait | Gene | Allele | p-value | Effect | SE | p-value | Effect | SE |
| AGECL | TEKT4 | A | 0.074 | −14.14 | 7.845 | 0.732 | −1.78 | 5.323 |
| LOC100138021 | G | 0.382 | 8.489 | 9.701 | 0.588 | −3.643 | 6.792 | |
| CENPI | A | 0.462 | −7.269 | 9.916 | 0.556 | 3.661 | 6.271 | |
| TAF7L | T | 0.272 | −10.66 | 9.661 | 0.498 | 4.602 | 6.817 | |
| NXF2 | C | 0.373 | −6.142 | 6.883 | 0.86 | 1.362 | 8.079 | |
| CYLC1 | A | 0.861 | 1.122 | 6.713 | 0.29 | 8.478 | 7.972 | |
| TEX11_38 | A | 0.932 | 0.6909 | 8.611 | 0.775 | 1.891 | 6.825 | |
| TEX11_696 | A | 0.821 | 1.859 | 8.549 | 0.805 | 1.661 | 6.987 | |
| AR | A | 0.022 | 15.79 | 6.833 | 0.747 | −2.314 | 7.377 | |
| UXT | T | 0.062 | 13.27 | 7.039 | 0.918 | −1.027 | 10.59 | |
| SPACA5 | T | 0.196 | 18.18 | 13.95 | 0.874 | −1.091 | 7.238 | |
| PPAI | TEKT4 | A | 0.276 | −9.85 | 8.994 | 0.792 | 1.287 | 5.048 |
| LOC100138021 | G | 0.138 | 15.61 | 10.43 | 0.579 | 3.636 | 6.607 | |
| CENPI | A | 0.574 | 5.844 | 10.48 | 0.281 | 6.447 | 5.943 | |
| TAF7L | T | 0.224 | 13.01 | 10.62 | 0.467 | 4.797 | 6.604 | |
| NXF2 | C | 0.907 | −0.8449 | 7.67 | 0.331 | 7.511 | 7.703 | |
| CYLC1 | A | 0.616 | −3.604 | 7.283 | 0.369 | 6.873 | 7.629 | |
| TEX11_38 | A | 0.468 | −6.915 | 9.559 | 0.278 | 7.073 | 6.490 | |
| TEX11_696 | A | 0.593 | −5.026 | 9.504 | 0.246 | 7.696 | 6.598 | |
| AR | A | 0.665 | 3.195 | 7.511 | 0.485 | 4.831 | 6.943 | |
| UXT | T | 0.316 | −7.496 | 7.436 | 0.516 | −6.693 | 10.37 | |
| SPACA5 | T | 0.19 | 18.91 | 14.31 | 0.823 | 1.479 | 6.849 | |
Significance (p-value), allelic substitution effect (Effect) for the named allele of each SNP and its standard error (SE) of the genotypes of each SNP on age at first corpus luteum (AGECL) and postpartum anestrus interval (PPAI).