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Number and type of transposable elements (TEs) in retained introns
| Class of TE | Type of TE | Number of TEs inserted in maize retained introns | Number of TEs inserted in teosinte retained introns |
|---|---|---|---|
| I | LTR/Copia | 11 | 0 |
| I | LTR/Gypsy | 11 | 0 |
| I | LTR/unknow | 2 | 0 |
| I | LINE | 30 | 2 |
| II | hAT | 14 | 0 |
| II | Helitron | 19 | 5 |
| II | En-spm | 5 | 1 |
| II | Stowaway | 5 | 0 |
| II | Others | 6 | 0 |
| Total TEs | 108 | 9 | |
| Number of the retained intron with TE | 98 | 9 | |
| Total number of retained introns | 9,299 | 3,547 | |
