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. Author manuscript; available in PMC: 2015 May 15.
Published in final edited form as: Evolution. 2012 Apr 9;66(8):2439–2450. doi: 10.1111/j.1558-5646.2012.01622.x

Table 1.

Location and effect size of significant QTL for landmark (x, y), and size-adjusted metric traits (s28–s37). See Figure S1 and Table S1 for description of traits. Lg refers to linkage group, position refers to the most likely QTL location in centiMorgans, LOD is the log of odds ratio, and PVE is the percentage of phenotypic variance explained. Effect size and direction (positive and negative) of QTL refers to the magnitude of change (in millimeters) when replacing two marine alleles with freshwater alleles at the QTL.

Population Trait Lg Position LOD PVE Effect size and direction
Cranby s37 1 50 9.28 7.21 0.0035
Cranby x4 1 50 10.63 12.31 0.3357
Cranby x23 2 6 8.15 9.48 −0.0820
Cranby x26 4 44 8.95 9.06 0.1611
Cranby y4 4 44 8.26 8.52 0.0939
Cranby s32 4 46 13.99 13.98 0.3678
Cranby x3 4 46 9.21 7.15 −0.2971
Cranby s33 4 48 35.38 28.87 1.0321
Cranby s35 4 50 14.50 15.41 −0.2750
Cranby x8 4 50 10.98 11.16 0.3682
Cranby y5 4 50 17.62 18.35 0.5192
Cranby s34 4 50 46.90 40.56 1.0315
Cranby s28 4 52 12.76 13.57 0.7285
Cranby x24 4 54 13.98 14.68 0.3185
Cranby y2 7 30 7.78 8.90 −0.1388
Cranby s31 7 34 9.64 6.87 0.0105
Cranby y8 7 45 8.58 9.40 0.1117
Cranby s36 8 22 7.77 8.85 −0.0806
Cranby y6 9 16 7.83 8.62 0.0786
Cranby y12 12 30 8.12 8.95 0.0159
Cranby x12 12 36 9.74 9.60 0.1123
Cranby x11 12 40 7.84 7.57 0.0903
Cranby x17 16 27 7.75 6.34 −0.0948
Cranby x1 18 0 9.60 10.45 −0.2108
Cranby s37 18 4 12.88 10.61 −0.1786
Cranby y25 21 0 10.31 10.61 −0.0221
Cranby y26 21 0 10.03 9.97 −0.0136
Hoggan x12 1 0 8.10 9.07 −0.0951
Hoggan x17 1 0 8.63 6.44 −0.0835
Hoggan s32 4 38 11.27 15.12 0.2720
Hoggan s34 4 42 16.51 22.75 0.6804
Hoggan s33 4 42 12.92 15.74 0.9389
Hoggan y15 4 44 8.39 13.06 0.1208
Hoggan x6 4 44 8.85 11.81 0.3191
Hoggan s28 4 44 10.34 13.85 0.7743
Hoggan x25 7 34 9.77 12.83 0.1989
Hoggan x24 7 34 8.60 13.32 0.2654
Hoggan s29 12 14 9.21 10.30 −0.1171
Hoggan s28 13 16 7.65 10.50 −0.5081
Hoggan y9 19 16 7.80 9.79 0.0288
Hoggan s33 20 8 9.71 11.72 0.6897
Graham y22 1 30 7.86 8.57 0.0513
Graham x23 1 68 7.71 9.11 0.1412
Graham y5 4 50 8.48 10.29 0.3040
Graham s32 4 56 9.16 10.40 0.3018
Graham y7 4 56 7.83 8.31 0.1931
Graham s34 4 60 10.98 11.91 0.5130
Graham y24 4 60 7.65 9.02 0.1955
Graham x24 4 2 9.51 10.63 0.2380
Graham s33 4 64 8.11 8.24 0.3758
Graham s34 9 2 10.33 12.08 0.2020
Graham s30 9 6 12.94 10.98 −0.2427
Graham s37 12 24 8.14 9.04 −0.1224
Graham y6 12 26 8.84 10.97 −0.2330
Graham y2 12 30 7.59 10.05 −0.1757
Graham x26 12 32 8.33 9.15 0.2506
Graham x5 12 40 8.22 9.66 0.1528
Graham y8 12 50 10.32 9.29 0.1474
Graham s30 12 55 9.13 7.66 0.0067
Graham y13 14 40 8.01 7.74 −0.1440
Graham y18 14 40 7.86 7.99 0.1699
Graham x25 17 32 8.01 9.49 0.2376
Graham y27 20 44 8.43 9.28 −0.1581
Paq x7 1 22 8.44 7.67 −0.1548
Paq x27 1 34 7.73 8.92 −0.2084
Paq x10 1 56 9.49 7.33 0.1963
Paq x9 1 58 8.25 8.59 0.1568
Paq x6 4 11 8.12 5.81 0.0689
Paq s29 10 40 9.16 8.17 −0.0346
Paq x16 11 22 8.68 8.23 −0.1602
Paq x25 12 38 10.03 11.07 −0.2152
Paq x6 12 44 9.52 7.72 0.2201
Paq y27 13 16 8.85 8.80 0.1025
Paq y6 13 36 9.54 10.67 0.2036
Paq s37 16 14 8.06 9.59 0.1512
Paq y24 16 14 8.05 8.60 0.1098
Paq x20 18 0 7.62 8.98 0.0077