Table 3.
Statistics of assembly quality.
| Contig | Unigene | |
|---|---|---|
| Total number | 35,532 | 25,811 |
| Total length (nt) | 17,841,209 | 25,229,528 |
| Mean length (nt) | 502 | 977 |
| N50 | 1262 | 1658 |
| Total consensus sequences | − | 25,811 |
| Distinct clusters | − | 9395 |
| Distinct singletons | − | 16,416 |
Note: Transcriptome de novo assembly is carried out by short reads assembling program -- Trinity. The statistical parameters of the assembly quality in cotig and unigene included total number, total length (nt) and mean length (nt); measure of average contig or unigene length (N50 length), total consensus sequences, distinct clusters and distinct singletons.