Table 1.
Summary statistics for the anchored-enriched (AHE) loci and transcriptome mining (TM) exons at different taxonomic levels and excluding non-informative loci
| Locus length | PICs | % identity | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| N samples | N loci | Max | Min | Mean | Max | Min | Mean | Max | Min | Mean | |
| Anchored-enriched (AHE) | |||||||||||
| All samples | 44 | 415 | 1458 | 250 | 534 | 152 | 6 | 52.1 | 99.6 | 92.1 | 96.5 |
| Carlia 1 | 5 | 264 | 1458 | 250 | 541 | 36 | 1 | 2.3 | 99.0 | 94.1 | 99.0 |
| C. rubrigularis 1 | 4 | 253 | 1458 | 250 | 540 | 36 | 1 | 2.2 | 99.9 | 94.5 | 99.4 |
| Lampropholis | 13 | 414 | 1458 | 250 | 534 | 44 | 1 | 15.0 | 99.7 | 95.0 | 98.0 |
| La. coggeri 1 | 6 | 314 | 1458 | 250 | 543 | 13 | 1 | 3.1 | 99.9 | 97.8 | 99.4 |
| Niveoscincus 1 | 5 | 207 | 1458 | 250 | 538 | 8 | 1 | 1.6 | 99.7 | 96.7 | 98.9 |
| Saproscincus | 9 | 412 | 1458 | 250 | 535 | 45 | 1 | 6.7 | 99.9 | 90.1 | 98.4 |
| S. basiliscus 1 | 5 | 221 | 1458 | 250 | 555 | 13 | 1 | 2.1 | 99.9 | 95.6 | 99.5 |
| Transcriptome mining (TM) | |||||||||||
| All taxa | 11 | 1650 | 3249 | 101 | 337 | 132 | 1 | 19.2 | 99.7 | 90.1 | 96.3 |
| TM data pruned to number of AHE loci (highest PICs) | |||||||||||
| All taxa | 11 | 415 | 3249 | 163 | 617 | 152 | 23 | 41.3 | 99.1 | 95.3 | 90.1 |
| TM data pruned to number of AHE loci (randomly sampled) | |||||||||||
| All taxa | 11 | 415 | 2480 | 103 | 337 | 120 | 1 | 19.2 | 99.6 | 90.8 | 96.3 |
| AHE data pruned to TM taxon sampling | |||||||||||
| All taxa | 11 | 415 | 1458 | 250 | 534 | 96 | 1 | 25.4 | 99.7 | 91.8 | 96.3 |
1Phylogenetic analyses were not performed on these data sets.