Table 2.
List of miRNA targets, discussed in the paper. List of miRNA and their respective targets as identified by TARGET FINDER, and divided per plant organ. GRAPE_IGGP_v1 12X assembly - v2 annotation was used. Only the miRNA/targets pair discussed in the paper are shown. All these miRNA targets are also confirmed by psRNATarget, with the exception of VIT_210s0003g00870, VIT_216s0022g02450, VIT_216s0100g00030
| Tissues | vvi-miRNA | Target | Predicted function |
|---|---|---|---|
| Inflorescence/Flowers | miR156a; miR156b-5p; miR156c-5p; miR156d-5p; miR156e; miR156f; miR156g-5p; miR156i | VIT_208s0007g06270 | Squamosa promoter-binding-like protein 9-like |
| VIT_211s0065g00170 | Squamosa promoter-binding-like protein 12-like | ||
| VIT_201s0010g03710 | Squamosa promoter-binding-like protein 2 | ||
| VIT_201s0011g00130 | Squamosa promoter-binding-like protein 6-like | ||
| VIT_201s0010g03910 | Squamosa promoter-binding-like protein 13-like | ||
| VIT_215s0021g02290 | Squamosa promoter-binding-like protein 7-like | ||
| VIT_217s0000g01260 | Squamosa promoter-binding-like protein 13 | ||
| VIT_217s0000g05020 | Squamosa promoter-binding-like protein 6-like | ||
| miR156a; miR156b-5p; miR156c-5p; miR156d-5p; miR156e | VIT_214s0068g01780 | Squamosa promoter-binding-like protein 16-like | |
| miR156b-5p; miR156c-5p; miR156d-5p; miR156e | VIT_219s0090g01180 | Uncharacterized protein | |
| miR156b-5p; miR156c-5p; miR156d-5p | VIT_215s0046g01020 | Uncharacterized protein loc100241322 | |
| miR156e | VIT_204s0008g02640 | Plastid-lipid-associated protein 8 | |
| miR172c-3p | VIT_213s0019g03550 | AP2 domain-containing transcription factor | |
| miR172c-3p; miR172d | VIT_207s0031g00220 | Transcription factor Apetala2 | |
| VIT_206s0004g03590 | Transcription factor Apetala2 | ||
| VIT_208s0040g03180 | AP2 domain-containing transcription factor | ||
| miR172d | VIT_200s0184g00102 | AP2 domain-containing transcription factor | |
| miR390-5p | VIT_210s0003g01890 | LRR receptor-like serine threonine-protein kinase RFK1 | |
| VIT_216s0098g01090 | Leucine-rich repeat receptor-like protein kinase PEPR1 | ||
| miR393a-5p; miR393b | VIT_214s0068g01330 | LRR receptor-like serine threonine-protein kinase RFK1 | |
| VIT_207s0104g01320 | Transport inhibitor response 1 | ||
| VIT_214s0030g01240 | Transport inhibitor response 1 | ||
| grape-m9269 | VIT_208s0007g05240 | Phosphatidylinositol-4-phosphate 5-kinase | |
| Stamen | grape-m5380; grape-m7774 | VIT_205s0049g00340 | 1-aminocyclopropane-1-carboxylate oxidase homolog 1 |
| VIT_200s1313g00010 | 1-aminocyclopropane-1-carboxylate oxidase homolog 1 | ||
| VIT_205s0049g00330 | 1-aminocyclopropane-1-carboxylate oxidase homolog 1 | ||
| VIT_205s0049g00370 | 1-aminocyclopropane-1-carboxylate oxidase homolog 1 | ||
| VIT_216s0022g02420 | Protein | ||
| VIT_216s0100g00030 | Cucumisin-like | ||
| VIT_216s0022g02450 | Protein | ||
| VIT_205s0049g00350 | 1-aminocyclopropane-1-carboxylate oxidase homolog 1 | ||
| Berry development | miR319b-3p; miR319c-3p; miR319f-3p; miR319g | VIT_213s0067g01630 | Transcription factor gamyb-like |
| VIT_210s0003g00870 | Transcription factor TCP4-like | ||
| miR319c-5p | VIT_214s0081g00480 | Protein | |
| miR395a; miR395c-3p; miR395d; miR395e-3p; miR395f-3p; miR395g-3p; miR395h-3p; miR395i-3p; miR395j-3p; miR395k-3p; miR395l-3p | VIT_207s0031g00940 | Sulphate bicarbonate oxalate exchanger and transporter SAT-1 | |
| miR395h-5p; miR395k-5p | VIT_214s0066g00910 | Protein | |
| miR395n | VIT_205s0020g04210 | ATP sulphurylase | |
| miR396a-3p | VIT_207s0031g02320 | Protein | |
| VIT_200s0208g00090 | Protein trichome birefringence-like 16 | ||
| miR396a-5p | VIT_210s0597g00040 | Pentatricopeptide repeat-containing protein | |
| VIT_202s0025g04910 | Growth-regulating factor | ||
| VIT_215s0048g01740 | Growth-regulating factor | ||
| VIT_200s0494g00010 | Transcription activator | ||
| VIT_218s0001g08650 | Uncharacterized protein loc100260890 | ||
| miR396a-5p; miR396c-5p; miR396d-5p | VIT_216s0039g01450 | Growth-regulating factor 1 | |
| VIT_209s0002g01350 | Growth-regulating factor 5 | ||
| VIT_211s0016g01250 | Growth-regulating factor 5 | ||
| VIT_208s0007g03760 | Growth-regulating factor 4 | ||
| VIT_216s0098g01080 | Protein | ||
| VIT_202s0025g02680 | Uncharacterized protein loc100258227 | ||
| miR396a-5p; miR396b-5p | VIT_207s0191g00220 | Uncharacterized protein loc100251922 | |
| miR396b-3p | VIT_201s0011g01220 | Double top | |
| miR396c-3p | VIT_205s0077g02140 | Glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-A | |
| miR396d-3p | VIT_215s0024g00350 | TATA box binding protein associated factor-like protein | |
| grape-m6905 | VIT_213s0064g00290 | bifunctional dihydroflavonol 4-reductase flavanone 4-reductase-like | |
| VIT_213s0047g00940 | bifunctional dihydroflavonol 4-reductase flavanone 4-reductase-like | ||
| VIT_203s0110g00350 | Cinnamoyl reductase-like protein | ||
| VIT_213s0047g00990 | bifunctional dihydroflavonol 4-reductase flavanone 4-reductase-like | ||
| VIT_213s0064g00340 | Phenylacetaldehyde reductase | ||
| VIT_213s0067g00530 | bifunctional dihydroflavonol 4-reductase flavanone 4-reductase-like | ||
| VIT_213s0067g00460 | bifunctional dihydroflavonol 4-reductase flavanone 4-reductase-like | ||
| VIT_213s0047g00540 | bifunctional dihydroflavonol 4-reductase flavanone 4-reductase-like |