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. 2015 May 18;6:426. doi: 10.3389/fmicb.2015.00426

Table 1.

Operational taxonomic units (OTUs) highly expressing 16S rRNA after the 5-day anoxic incubation of nitrate-amended marine sediments.

OTU ID Closely related species Similarity (%) Accession number Phylum/Class Family Relative abundance (%)a Increasing ratio (fold)b Putative functionc
4053 Sulfurimonas denitrificans 98.4 NR121690 Epsilonproteobacteria Helicobacteraceae 14.64 2421.7 Sulfur oxidation
566 Cellulomonas oligotrophica 98.8 KF817659 Actinobacteria Cellulomonadaceae 2.60 430.2 Fermentation, nitrate reduction
13536 Thioalkalispira microaerophila 97.6 NR025239 Gammaproteobacteria Thioalkalispiraceae 0.82 269.8 Sulfur oxidation
11183 Thioalbus denitrificans 96.8 NR122087 Gammaproteobacteria Ectothiorhodospiraceae 0.43 143.1 Sulfur oxidation
8007 Geobacter bremensis 100 KF800712 Deltaproteobacteria Geobacteraceae 6.78 93.5 Iron(III) reduction
3944 Thioalbus denitrificans 100 NR122087 Gammaproteobacteria Ectothiorhodospiraceae 13.37 38.8 Sulfur oxidation
2401 Geothrix fermentans 99.2 NR036779 Acidobacteria Holophagae 0.21 34.7 Iron(III) reduction
14834 Thioalbus denitrificans 96.8 NR122087 Gammaproteobacteria Ectothiorhodospiraceae 0.20 33.7 Sulfur oxidation
7917 Thioprofundum lithotrophicum 95.2 NR112829 Gammaproteobacteria Thioalkalispiraceae 0.09 30.7 Sulfur oxidation
2865 Pelobacter carbinolicus 95.2 NR075013 Deltaproteobacteria Pelobacteraceae 0.09 28.6 Iron(III) reduction, sulfate reduction
425 Geobacter luticola 99.6 NR114303 Deltaproteobacteria Geobacteraceae 6.02 26.5 Iron(III) reduction
20 Thioprofundum lithotrophicum 94.5 NR112829 Gammaproteobacteria Thioalkalispiraceae 0.07 22.5 Sulfur oxidation
12681 Thioprofundum lithotrophicum 96.4 NR112829 Gammaproteobacteria Thioalkalispiraceae 0.33 22.1 Sulfur oxidation
5722 Thioalkalispira microaerophila 96.8 NR025239 Gammaproteobacteria Thioalkalispiraceae 10.17 21.4 Sulfur oxidation
15348 Thioprofundum lithotrophicum 95.3 NR112829 Gammaproteobacteria Thioalkalispiraceae 0.31 17.4 Sulfur oxidation
13687 Desulfovibrio butyratiphilus 95.3 NR112679 Deltaproteobacteria Desulfovibrionales 0.09 15.3 Butyrate oxidation, sulfate reduction
3917 Geobacter pelophilus 97.6 NR026077 Deltaproteobacteria Geobacteraceae 0.12 12.9 Iron(III) reduction
14604 Desulfocapsa sulfexigens 93.3 KF952439 Deltaproteobacteria Desulfobacterales 0.06 10.2 Sulfur disproportionation
12930 Thioalkalispira microaerophila 97.6 NR025239 Gammaproteobacteria Thioalkalispiraceae 0.12 9.7 Sulfur oxidation
17265 Desulfomonile tiedjei 98.4 NR074118 Deltaproteobacteria Syntrophaceae 0.09 7.7 Sulfate reduction
9626 Desulfobulbus mediterraneus 94.5 NR025150 Deltaproteobacteria Desulfobulbaceae 4.05 6.2 Sulfate reduction
1714 Thioprofundum lithotrophicum 96.0 NR112829 Gammaproteobacteria Thioalkalispiraceae 0.06 6.1 Sulfur oxidation

aThe relative abundance of the 16S rRNA transcripts in the NT5 library. More than 0.05% of the abundance is shown.

bThe increasing ratio was calculated from the relative abundance in the NT5 library to that in the CT5 library.

cThe putative function was determined by the reported physiology of the closely related species.