Table 5. Reconstruction of 5-node synthetic Yeast IRMA network.

	Switch on data			Switch off data
Method	PPV	Recall	F score	PPV	Recall	F score
Broken stick	0.40(0.5)	0.67(0.67)	0.50(0.57)	0.67(0.67)	0.33(0.33)	0.44(0.44)
Bartlett	0.60(0.75)	0.50(0.5)	0.60(0.55)	0.56(0.56)	0.83(0.83)	0.67(0.67)
TSNI integral	0.40(0.63)	0.83(0.83)	0.53(0.71)	0.29(0.44)	0.67(0.67)	0.40(0.53)
TSNI in Cantone et al.	- (1.00)	- (0.67)	- (0.80)	- (0.75)	- (0.50)	- (0.60)

Broken stick, Bartlett’s and TSNI integral were evaluated on the dynamic data of Yeast 5 node synthetic IRMA network against TSNI performance reported in Cantone et al. 2009 [62]. Values in parentheses show the performance when self-regulation is not considered in the inference as in DREAM 3 challenge.