Table 5.
Determination of transcription factors are expressed in many tissues using Gene Expression Barcode 2.0 (McCall et al., 2011). Rows that are bold indicate transcription factors that are not normally expressed in breast tissue.
| Gene | Genbank | Proportion | Entropy | High entropy | Tissues |
|---|---|---|---|---|---|
| HIF1A | NM_001530 | 0.916 | 0.289 | Yes | Many |
| E2F1 | M96577 | 0 | 0 | No | None |
| E2F1 | NM_005225 | 0 | 0 | No | None |
| GCNF | NM_001489 | 0 | 0.011 | No | None |
| GCNF | X99975 | 0 | 0 | No | None |
| GCNF | U80802 | 0 | 0.011 | No | None |
| GCNF | AF004291 | 0.008 | 0.015 | No | Testes |
| GCNF | N30069 | 0 | 0.004 | No | None |
| GCNF | AA176289 | 0 | 0.004 | No | None |
| GCNF | AW237089 | 0 | 0.012 | No | None |
| HMGA1 | NM_002131 | 0.534 | 0.349 | Yes | Many |
| HMGA1 | AF176039 | 0 | 0.01 | No | None |
| MYC | NM_002467 | 0.649 | 0.24 | Yes | Many |
| MYC | BF514781 | 0 | 0.005 | No | None |
| JUN | BG491844 | 0.947 | 0.087 | No | Many |
| JUN | BC002646 | 0.16 | 0.251 | Yes | Adipose_tissue breast breast_stroma breast_stroma:tumor bronchus cd31 + _cells cd49a + _cells cervix dorsal_root_ganglia endometrium lung myometrium ovary prostate_gland skeletal_muscle stomach_cardiac thyroid trachea trigeminal_ganglia urethra vagina |
| JUN | NM_002228 | 0.634 | 0.39 | Yes | Many |
| JUN | BE327172 | 0.092 | 0.178 | No | Breast_stroma breast_stroma:tumor bronchus cd49a + _cells fallopian_tube_epithelium head_and_neck_squamous_cell_carcinoma:tumor lung ovary parotid_gland thyroid trachea trigeminal_ganglia |
| SOX9 | AI382146 | 0.695 | 0.222 | Yes | Many |
| SOX9 | NM_000346 | 0.679 | 0.293 | Yes | Many |
| NFKB1 | M55643 | 0.374 | 0.216 | Yes | Many |
| NFE2 | L13974 | 0.084 | 0.06 | No | Blood bone_marrow cd14 + _cells lymphocytes macaca_mulatta_blood monocyte-derived_dendritic_cells monocyte neutrophils pbmc platelets stratagene_reference_rna |
| BACH2 | NM_021813 | 0.076 | 0.121 | No | Blood cd3 + _t_cells cd49a + _cells cd4 + _cells jurkat_cells lymphocytes macaca_mulatta_blood pbmc platelets tonsil |
| BACH2 | AW450901 | 0 | 0.053 | No | None |
| CEBPB | AL564683 | 0.977 | 0.162 | No | Many |
| NFE2L1 | AI361227 | 0.947 | 0.073 | No | Many |
| NFE2L1 | NM_003204 | 0.977 | 0.033 | No | Many |
| NFE2L1 | H93013 | 0.924 | 0.093 | No | Many |
| HNF1A | M57732 | 0 | 0 | No | None |
| HNF1A | X71347 | 0 | 0.024 | No | None |
| ZIC3 | NM_003413 | 0.008 | 0.006 | No | Cerebellum |
| STAT1 | NM_007315 | 0.916 | 0.333 | Yes | Many |
| STAT1 | BC002704 | 0.336 | 0.305 | Yes | Many |