TABLE 3:
Summary table.
FH2 location | Fertility rate (% hatched) | Stable dimer? | Polymerization rate at t1/2 (a.u./s) | Elongation rate (subunits/s) | koff × 10−5 (s−1) | Characteristic run length (μm)a | Sequence conservationb | |
---|---|---|---|---|---|---|---|---|
WT | N/A | 88 | + | 65.8 | 27.0 ± 3.2 | 24.5 ± 0.4 | 300 ± 40 | N/A |
K586M | Lasso | 25 | + | 54.4 | 19.3 ± 1.5 | 85.2 ± 2.3 | 62 ± 5 | ++ |
D854N | Post | 19 | + | 22.2 | 25.5 ± 4.1 | 59.2 ± 2.0 | 120 ± 20 | ++ |
P597L | Lasso | 18 | + | 27.9 | 19.7 ± 3.2 | 210.0 ± 6.2 | 26 ± 4 | c |
H977Y | Post | 9 | +/- | 46.7 | 19.1 ± 2.8 | 130.0 ± 2.3 | 40 ± 6 | – |
D662N | Lasso | 2 | + | 65.9 | 24.3 ± 2.7 | 29.7 ± 0.9 | 220 ± 30 | + |
L768H | Knob | 1 | – | n.d. | n.d. | n.d. | n.d. | ++ |
I751T | Knob | 0 | – | 16.6 | 25.3 ± 2.9 | 277.0 ± 4.8 | 25 ± 3 | ++ |
Δloop | Lasso | n.d. | + | 90.2 | 30.9 ± 3.7 | ≥ w.t. | ≥ w.t. | – |
n.d., not determined.
aCharacteristic run length = elongation rate (subunits s−1)/koff (s−1)/365 subunits μm−1.
b Degree of sequence conservation was determined by analyzing our sequence alignment (Supplemental Figure S1) with ESPript (http://espript.ibcp.fr; Robert and Gouet, 2014). ++, residues with similarity >70%; +, residues with similarity >30% but <70%; –, no apparent conservation.
cPro-597 is only conserved within the FMN family.