Skip to main content
. 2015 May 19;5:9747. doi: 10.1038/srep09747

Figure 8. Some putative E. coli gmrSD genes associated with putative DNA transposases, Type I R-M systems and Type IV restriction systems (Mrr) in bacterial immigration control region (ICR).

Figure 8

The “Gene cluster” function on the web server kegg.jp was used to generate the table listing GmrSD homologs and associated DNA transposases and Type I and IV restriction systems. All gene product abbreviations can be found in www.kegg.jp. GmrSD homologs (second column) in some E. coli strains: E. coli O1 K1 H7 (APEC) = APECO1_2080, E. coli O6 K15 H31 536 (UPEC) = ECP_4674, E. coli O18 K1 H7 UTI89 (UPEC) = UTI89_C5048, E. coli LF82 = LF82_736, E. coli clone D i14 = i14_4938, E. coli O6 K2 H1 CFT073 (UPEC) = c5421, E. coli clone D i2 = i02_4938, E. coli ABU 83972 = ECABU_c49760, E. coli O81 ED1a (commensal) = ECED1_5210, E. coli PMV-1 = ECOPMV1_04800, E. coli O7 K1 IAI39 (ExPEC) = ECIAI39_4815, E. coli IHE3034 = ECOK1_4852, E. coli UM146 = UM146_22465, E. coli O83 H1 NRG 857C = NRG857_21960, E. coli P12b = P12B_c4425, E. coli SMS-3-5 (environmental) = EcSMS35_4888, E. coli C ATCC 8739 = EcolC_3721, E. coli O157 H7 EDL933 (EHEC) = Z5943m, E. coli O7 K1 CE10 = CE10_5085. Note, the 5mC (and 5hmC)-dependent type IV restriction genes mcrB/mcrC are replaced by gmrSD gene in these genomes.