Table 1.
Collection number, origin, bioproject and accession number of the 21 newly sequenced strains
| Number in CIRM-BIA collection (Rennes, France) | Number in actalia collection (Rennes, France) | Locus_tag | Isolated from (date) | Bioproject | Raw reads accession number |
|---|---|---|---|---|---|
| 9 | PFCIRM9 | Emmental cheese (1989) | PRJEB6427 | ERS638416 | |
| 118 | PFCIRM118 | Gruyère cheese (1973) | PRJEB6428 | ERS638410 | |
| 119 | PFCIRM119 | Gruyère cheese (1973) | PRJEB6430 | ERS638409 | |
| 121 | PFCIRM121 | Swiss cheese (1937) | PRJEB6431 | ERS638414 | |
| 122 | PFCIRM122 | NCIB (1992) | PRJEB6432 | ERS638421 | |
| 123 | PFCIRM123 | Morbier cheese (1992) | PRJEB6438 | ERS638423 | |
| 125 | ITG P14 | PFCIRM125 | Emmental cheese (1992) | PRJEB6434 | ERS638418 |
| 127 | ITG P18 | PFCIRM127 | Emmental cheese (1992) | PRJEB6435 | ERS638428 |
| 129 | ITG P20 | PFCIRM129 | Emmental cheese (1992) | PRJEB4826 | ERS638425 |
| 134 | PFCIRM134 | NA | PRJEB6441 | ERS638419 | |
| 135 | PFCIRM135 | ewe raw milk (1994) | PRJEB6442 | ERS638422 | |
| 138 | ITG P9 | PFCIRM138 | Emmental cheese (1992) | PRJEB6433 | ERS638424 |
| 139 | ITG P23 | PFCIRM139 | Emmental cheese (1992) | PRJEB6436 | ERS638426 |
| 456 | PFCIRM456 | raw milk Raclette cheese (1992) | PRJEB6445 | ERS638427 | |
| 508 | PFCIRM508 | Gruyère (1973) | PRJEB6429 | ERS638411 | |
| 512 | PFCIRM512 | raw milk Morbier cheese (1994) | PRJEB6439 | ERS638413 | |
| 513 | PFCIRM513 | egyptian ras cheese (1995) | PRJEB6440 | ERS638415 | |
| 514 | PFCIRM514 | hay (1994) | PRJEB6443 | ERS638417 | |
| 516 | PFCIRM516 | nepalian yack cheese (2000) | PRJEB6444 | ERS638420 | |
| 527 | PFCIRM527 | Fribourg cheese (1992) | PRJEB6437 | ERS638412 | |
| 1025 | ITG P1 | PFCIRM1025 | Emmental cheese (1992) | PRJEB6446 | ERR738371 |
All sequences and annotations are now publicly available. They were deposited in the EMBL database and can now be retrieved using the Bioproject accession.