Table 2.

Number of significant miRNA genomic loci

Phenotype	condFDR	FDR	p-value
	(<0.01)	(<0.01)	(Bonferroni)
BD	8	2	0
BMI	7	5	3
CD	55	34	16
CPD	1	0	0
HDL	52	38	18
Height	189	123	51
LDL	62	37	19
MS	51	42	25
PrCa	16	12	6
SBP	12	6	2
SCZ	29	14	6
T2D	1	1	1
TG	84	43	20
UC	54	36	18
WHR	4	3	0

Comparative table showing number of identified genomic loci with conditional false discovery rate (condFDR < 0.01) compared with false discovery rate (FDR < 0.01) and standard p-value (Bonferroni correction p < 5×10⁻⁸). We show that the condFDR method improves the discovery of miRNA SNPs across the 15 phenotypes. The numbers reported here are after pruning SNPs for LD at a threshold of r² ≤ 0.2. BD, Bipolar Disorder; BMI, Body Mass Index; CD, Crohn's disease; CPD, Cigarettes per Day; HDL, High density lipoprotein; LDL, Low density lipoprotein; MS, multiple sclerosis; PrCa, prostate cancer; SBP, systolic blood pressure; SCZ, Schizophrenia; T2D, Type 2 Diabetes; TG, triglycerides; UC, Ulcerative Colitis; WHR, Waist to Hip Ratio.