Table 1. M. × domestica, P. persica, P. mume, F. vesca, and F. nipponica T2-RNase genes, larger than 500 bp.
| Gene& | Location | T2-RNase amino acid pattern 4 | Intron number | IP |
|---|---|---|---|---|
| M. domestica MDP0000682955 | chr1:22338267..22339935 | - | 1 | 9.06 |
| M. domestica MDP0000164105 { | chr1:1866066.. 1866836 | 1 | 8.94 | |
| M. domestica MDC021344. 1 + | chr1:11078800.. 11079914 | - | 2 | 8.06 |
| M. domestica MDC003135. 1 + | chr4:<18896214.. 18896958 | CVSIFL | 1 | 8.8 |
| M. domestica MDP0000267606 | chr5:18789226.. 18793453 | - | 8 | 6.99 |
| M. domestica MDP0000236215 | chr5:18797610.. 18799502 | - | 5 | 7.49 |
| M. domestica MDP0000213741 | chr10:14197693.. 14200724 | - | 8 | 6.51 |
| M. domestica MDP0000251832A | chr10:16073208.. 16073872 | - | 1 | 8.92 |
| M. domestica MDP0000210735A | chr10:<16057129.. 16057893 | - | 1 | 7.71 |
| M. domestica MDP0000135121A- MDP0000191077A | chr10:16077500.. 16078329 | - | 1 | 8.55 |
| M. domestica MDP0000301521A | chr10:16048401.. 16049187 | - | 1 | 7.60 |
| M. domestica MDP0000826052 | chr13:4501130.. 4503209 | CPSSNG | 3 | 5.54 |
| M. domestica MDP0000184285 { | chr15:9375831.. 9376749 | - | 1 | 9.00 |
| M. domestica MDP0000160706 | chr15:9373449.. 9374358 | - | 1 | 9.01 |
| M. domestica MDP0000413951 { | chr15:9322264.. 9323181 | - | 1 | 8.93 |
| M. domestica MDP0000400831 | chr16:3068981.. 3073746 | CPSSSG | 4 | 4.56 |
| M. domestica MDC027512.1 | chr16:3068534.. 3069508 | CPS(R/G)NG | 3 | 4.68 |
| M. domestica MDP0000345854 (S2-RNase #) | chr17:21481499.. 21482326 | - | 1 | 9.09 |
| M. domestica MDP0000266136 (S3-RNase #) | unanchored:31129763.. 31131739 | - | 1 | 9.29 |
| M. domestica MDP0000250548A | unanchored:63263516.. 63265109 | - | 1 | 7.54 |
| M. domestica MDP0000164359 | unanchored:7252151.. 7253066 | - | 1 | 8.8 |
| P. persica ppa011026m | scaffold_1:27131291.. 27132588 | CPSGSG | 3 | 4.76 |
| P. persica ppa011014m | scaffold_1:27134558.. 27136052 | CPSSNG | 3 | 5.01 |
| P. persica ppa011133m | scaffold_5:8474328... 8475151 | AQGKDN | 1 | 8.85 |
| P. persica ppa018459m (S2-RNase) | scaffold_6:26446964.. 26448303 | - | 2 | 9.31 |
| P. persica ppa024151m | scaffold_8:19241555.. 19242552 | - | 2 | 9.33 |
| P. persica ppa009963m | scaffold_8:17565332.. 17567646 | RPSSCH | 8 | 7.47 |
| P. mume scaffold 241.33 (S-RNase) | scaffold241_33.9:14388.. 18225 | - | 2 | 9.40 |
| P. mume scaffold 442.35 | scaffold442_35.0:1381191.. 1382394 | - | 2 | 8.98 |
| P. mume scaffold 202.35.1 | scaffold202_35.5:128144.. 128944 | - | 2 | 8.77 |
| P. mume scaffold 202.35.2 + | scaffold202_35.5:171196.. 183215 | - | 2 | 8.77 |
| P. mume scaffold 101.33.1 | scaffold101_33:595252.. 596037 | - | 1 | 9.00 |
| F. vesca 12961 | LG1 scf0513192:1522693.. 1523488 | - | 1 | 7.56 |
| F. vesca scf0513144.1 + | LG2 scf0513144:220982.. 212791 | - | 2 | 9.09 |
| F. vesca 04702 | LG4 scf0513158:3029880.. 3030999 | CPSSNG | 3 | 5.23 |
| F. vesca 04703a | LG4 scf0513158b:3033059.. 3034531 | CPSSSG | 2 | 4.64 |
| F. vesca scf0513159.1 | LG4 scf0513159:1951083.. 1955585 | VPGQRT | 1 | 8.44 |
| F. vesca 27604 | LG5 scf0513122:220987.. 222000 | CPSHTS | 3 | 9.37 |
| F. vesca 26822 | LG5 scf0513128:351490.. 352739 | - | 2 | 7.09 |
| F. vesca 22609 | LG5 scf0513066:569.. 2628 | - | 1 | 8.95 |
| F. vesca 00227 | LG6 scf0512945:94300.. 95094 | - | 1 | 6.28 |
| F. vesca 00230 | LG6 scf0512945:109295.. 110059 | - | 1 | 6.25 |
| F. vesca scf0513063.1 | LG6 scf0513063:97878.. 98677 | - | 1 | 8.25 |
| F. nipponica gi561674690-gi561985884-gi561957436 | FNI_icon04160559.1:209; FNI_iscf00016107.1:1323 | - | 2 | 8.75 |
| F. nipponica gi561805796 | FNI_iscf00094180.1: 2189.. 4087 | - | 2 | 9.15 |
| F. nipponica gi561877040 | FNI_iscf00056473.1: 321.. 1113 | - | 1 | 6.21 |
| F. nipponica gi561785734.a | FNI_iscf00105316.1: 149.. 1616 | CPSSSG | 2 | 4.58 |
| F. nipponica gi561785734.b | FNI_iscf00105316.1:3729.. 4877 | CPSSNG | 3 | 5.24 |
| F. nipponica gi561793890 | FNI_iscf00094180.1: 2189.. 4087 | - | 2 | 7.09 |
| F. nipponica gi561844698 | FNI_iscf00073203.1:509.. 1142 | - | 1 | 6.50 |
&- it should be noted that alternative human-curated gene annotations have been used for these genes. A FASTA file with the curated coding region sequences is provided as supplementary material (S1 File).
Underscored are the amino acid positions that are not according to the T2-RNase lineage amino acid pattern 4 [CG]P[QLRSTIK][DGIKNPSTVY][ADEIMNPSTV][DGKNQST]), described in Vieira et al. [7].
IP- isoelectric point.
#'Golden Delicious' was chosen for genome sequencing. Accordingly, this cultivar has S2-RNase and S3-RNase [43].
+ stop codons are found in the sequence.
{gaps were introduced to avoid stop codons.
- not found