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. 2014 Dec 12;9(6):1378–1390. doi: 10.1038/ismej.2014.222

Table 4. Taxa identified at the order or family level as indicators using Indicator Taxa Analysis.

Site classification (IV) Mean s.d. P Taxon (phylum, class, order)
Identified to order
 Unmined 94.3 42.5 12.4 <0.001 Proteobacteria, Betaproteobacteria, YCC11
 Unmined 75.3 56.4 9.96 0.046 Proteobacteria, Betaproteobacteria, A21b
 Unmined 72.3 55.6 7.31 0.0194 Proteobacteria, Alphaproteobacteria, Ellin329
 Unmined 71.5 56.2 6.32 0.012 Proteobacteria, Alphaproteobacteria, Rickettsiales
 Group A 84.7 50 10.68 0.004 Proteobacteria, Deltaproteobacteria, Myxococcales
 Group A 83.9 38.8 10.05 0.001 Proteobacteria, Gammaproteobacteria, HTCC2188
 Group A 78 56.5 7.09 0.0036 Proteobacteria, Gammaproteobacteria, Legionellales
 Group A 77.3 60 7.11 0.008 Nitrospirae, Nitrospira, Nitrospirales
 Group A 76.8 51.9 10.62 0.0168 Proteobacteria, Betaproteobacteria, MND1
 Group A 76.4 51.4 11.14 0.0238 Proteobacteria, Betaproteobacteria, Rhodocyclales
 Group B 86.6 42.1 10.35 0.0012 Firmicutes, Bacilli, Bacillales
 Group B 75 29.2 10.23 0.0028 Acidobacteria, Acidobacteria-6, CCU21
Site classification (IV) Mean s.d. P Taxon (phylum, class, order, family)
Identified to family
 Unmined 76.9 53 10.91 0.0286 Proteobacteria, Betaproteobacteria, A21b, EB1003
 Group A 100 38.9 10.6 <0.001 Proteobacteria, Gammaproteobacteria, Legionellales, Legionellaceae
 Group A 83 39.2 10.56 0.0032 Proteobacteria, Gammaproteobacteria, HTCC2188, 211ds20
 Group A 77.8 60.6 7.48 0.0142 Nitrospirae, Nitrospira, Nitrospirales, Nitrospiraceae
 Group A 76.4 51.3 11.29 0.0248 Proteobacteria, Betaproteobacteria, Rhodocyclales, Rhodocyclaceae
 Group A 72.7 56.5 4.84 0.0016 Acidobacteria, Acidobacteria-6, iii1-15, RB40
 Group A 70.5 56.4 4.13 <0.001 Proteobacteria, Betaproteobacteria, Methylophilales, Methylophilaceae
 Group B 80.8 41.5 9.84 0.002 Firmicutes, Bacilli, Bacillales, Bacillaceae
 Group B 71.8 56.4 4.76 0.0026 Bacteroidetes, Sphingobacteriia, Sphingobacteriales, Flexibacteraceae

Showing the top indicators with ⩾70% perfect indication based on relative abundance and relative frequency. Unmined indicators identified in comparison with all mined sites grouped. Comparison of group A (outlined symbols in Figures 2 and 3a) and group B (symbols not outlined in Figures 2 and 3a) did not include unmined sites.