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. 2015 May 21;16(1):400. doi: 10.1186/s12864-015-1570-9

Figure 7.

Figure 7

An example of the genome region with altered phylogeny across P.spp. Multiple sequence alignments of 7 sequenced strains and phylogenetic trees corresponding to them are shown for the region of recombination (B) and for flanking regions (A,C) respectively. Nucleotide sites with canonical topology (VKM F-3808; (VKM F-3557; VKM F-4514)) are shown in green, nucleotide sites with noncanonical topology (VKM F-4514; (VKM F-3557; VKM F-3808)) are shown in red. Bootstrap values for phylogenetic trees were calculated in 1000 replications. This recombination region corresponds to locus #1 in Additional file: 4 Table S3.