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. 2015 May 21;16(1):400. doi: 10.1186/s12864-015-1570-9

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© Leushkin et al.; licensee BioMed Central. 2015

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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Evolutionary scenario which explains the observed alignment. Strains F-3808, F-3557, and F-4514 from the same clade are shown as red opposed to all other strains shown as blue. The inverted segment is marked with arrow. Region with noncanonical phylogenetic configuration is marked with black lines. The observed alignment has (VKM F-3557, (VKM F-3808, VKM F-4514)) configuration inside recombination region (marked with short black lines) and (VKM F-3808, (VKM F-3557, VKM F-4514)) canonical configuration in flanking regions. This recombination region corresponds to locus #77 (inversion) in Additional file: 4 Table S3.