. 2015 May 20;5:10098. doi: 10.1038/srep10098

Table 1. Summary of the Orthologous genes and d _N/d _S analyses.

Species pairs	Ortholog data set & d_N/d_S estimation	No. of ortholog pairs after filter^a	Mean value^b			No. of ortholog pairs^c (d_N/d_S >0.5, P <0.05)	Mean value^c
			d_N	d_S	d_N/d_S		d_N	d_S	d_N/d_S
1. bun−can	BBH & ML	10990 (944)	0.054	0.39	0.15	69 (735)	0.152	0.273	0.557
2. bun−bro		11162 (950)	0.033	0.226	0.16	64 (959)	0.094	0.172	0.543
3. can−bro		11977 (938)	0.051	0.369	0.15	60 (719)	0.143	0.258	0.553
4. bun–can	BBH & YN	10852 (950)	0.054	0.369	0.159	62 (830)	0.139	0.256	0.546
5. bun–bro		10973 (959)	0.033	0.213	0.171	62 (1144)	0.08	0.148	0.538
6. can–bro		10843 (943)	0.05	0.351	0.158	54 (847)	0.137	0.246	0.56
7. bun–can	OrthoMCL & ML	7600 (807)	0.059	0.398	0.161	67 (587)	0.183	0.331	0.555
8. bun–bro		7793 (803)	0.036	0.233	0.171	48 (874)	0.115	0.201	0.632
9. can–bro		7566 (798)	0.055	0.377	0.16	56 (584)	0.163	0.297	0.551
10. bun–can	OrthoMCL & YN	7523 (809)	0.059	0.376	0.172	54 (710)	0.148	0.269	0.549
11. bun–bro		7632 (812)	0.036	0.219	0.184	41 (1066)	0.107	0.189	0.64
12. can–bro		7496 (801)	0.055	0.359	0.17	50 (723)	0.163	0.287	0.601

Bun = R. bungei, can = R. cantoniensis, bro = R. brotherusii. Numbers before species pairs correspond to the sheet numbers in Table S2.

ML = maximum likelihood method with model averaging; YN = approximate method with YN model

^aFilter = removing orthologous pairs with d_S < 0.01, d_S > 1.0, d_N > 1.0, aligned length < 150 bp.

^bestimated using orthologous pairs after filter.

^cestimated using the orthologous pairs with d_N/d_S > 0.5 and P < 0.05, orthologous pairs with possible alignment problems were excluded. Numbers in brackets indicate mean length of orthologs (including alignment gaps).

Table 1. Summary of the Orthologous genes and d N/d S analyses.

Table 1. Summary of the Orthologous genes and d _N/d _S analyses.