Table 2.

Overview of described software.

Name	Use	URL
miRVaS	Location annotation, RNA secondary structure impact prediction for miRNA gene variants	http://mirvas.bioinf.be/
Mfold	RNA secondary structure prediction	http://mfold.rna.albany.edu/
RNAfold	RNA secondary structure prediction	http://rna.tbi.univie.ac.at/cgi-bin/RNAfold.cgi
PHDcleav	Prediction of Dicer processing sites	http://www.imtech.res.in/raghava/phdcleav/
RISC binder	Prediction of preferential strand loaded into RISC	http://crdd.osdd.net:8081/RISCbinder/