FIG 2.

Characteristics of peptides eluted from Jurkat cells infected with MVA.HIVconsv. (A and B) Numbers of unique identified peptide sequences in the time course experiment (A) and their size distribution for each experiment (B). (C) Amino acid distribution of all eluted 8- to 12-mer peptides from all four samples in comparison to the known major anchor residues for the HLA allele of Jurkat cells, as listed above the graphs. The represented single-letter abbreviation for each amino acid is scaled by size according to the relative frequency of the amino acid at the indicated position in the eluted peptide (WebLogo 3.4). (D) Frequency of predicted binding of the identified peptide sequences to the HLA alleles of Jurkat cells, as determined with the NetMHC 3.4 server.