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. Author manuscript; available in PMC: 2015 May 26.
Published in final edited form as: Genet Epidemiol. 2012 Sep 10;36(8):856–869. doi: 10.1002/gepi.21673

TABLE III.

Simulation results at 95% significance level of testing additive genetic effect H0: α1 = 0 in model yi(t) = μ(t) + sexiβsex + xi1α1 + Ui(t) + Ei + εi by nonparametric linear penalized spline model, a correctly specified nonlinear function, and misspecified parametric functions of μ(t)

μ(t): Mean function Type I error or power
(bias)
α1 No. of obsc Empirical results: type I error or power (bias α1α^1)
Nonparametric modeld Correctly specifiede Misspecified: Linearf Misspecified: Cubicg
Logarithma Type I error (bias) 0 926 0.0535
(0.011)
0.0555
(0.005)
0.0615
(0.0161)
0.0540
(0.009)
0.5 896 0.1620 (−0.068) 0.1595 (−0.054) 0.2430 (−0.254) 0.1605 (0.509)
Power (bias) 1 926 0.4010 (0.005) 0.4055 (0.003) 0.5695 (−0.291) 0.4015 (1.009)
2 889 0.9465 (−0.008) 0.9470 (−0.001) 0.9000 (0.137) 0.9475 (2.009)
3 902 0.9980 (−0.007) 0.9980 (0.001) 0.9970 (0.124) 0.9980 (3.010)
Exponentialb Type I error (bias) 0 916 0.0525 (−0.015) 0.0525 (−0.018) 0.009 (−0.242) 0.0525 (−0.032)
0.5 908 0.1215 (0.003) 0.1240 (0.003) 0.0785 (−0.343) 0.1205 (0.467)
Power (bias) 1 900 0.3540 (−0.002) 0.3505 (0.001) 0.3120 (−0.522) 0.3430 (0.967)
2 906 0.8545 (−0.005) 0.8535 (−0.008) 0.7175 (−0.358) 0.8430 (1.966)
3 916 0.9990 (−0.015) 0.9990 (−0.018) 0.9910 (−0.242) 0.9990 (2.968)
a

True μ(t) = −34.2 + 81.7log(0.3(t + 21.7)).

b

True μ(t) = 110exp(0.0002×(t − 25)2).

c

The total number of observations.

d

μ(t) is estimated by nonparametric linear penalized spline model.

e

μ(t) is correctly specified.

f

μ(t) is misspecified as μ(t) = μ01t.

g

μ(t) is misspecified as μ(t) = μ0 + μ1t + μ2t2 + μ3t3.