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. 2015 May 27;2:20. doi: 10.3389/fmolb.2015.00020

Figure 3.

Figure 3

Neq and local flexibility. (A) For each conformation extracted from MD simulation, a PB sequence is assigned. (B) Neq profile provides direct identification of protein fragments in which local conformational change is observed. Here, in green, is indicated a flexible loop. The protein 3D structure representation is generated using PyMOL software (http://www.pymol.org, Delano, 2013).