Figure 5.

Integrin Calf-1 domain simulation using PBxplore. (A,B) show the superimposition of two distinct snapshots (in red and in yellow) extracted from a molecular dynamics. (C) Shows the PB distribution in terms of WebLogo (Crooks et al., 2004) obtained thanks to PBxplore, and (D) represents the superimposition of N_eq and RMSF for the whole domain. (E) Zoom on the loop containing the residue 66 of Cab-1 domain (blue) which shows a dedicated (F) PB pattern i with a (G) low N_eq and high RMSF, i.e., a mobile position in a “flexible” region. Visualization was created by the program PyMOL (http://www.pymol.org, Delano, 2013).