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. 2015 May 27;16(1):407. doi: 10.1186/s12864-015-1568-3

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© Brinkman et al.; licensee BioMed Central. 2015

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/4.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly credited. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated.

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MS/MS analysis of C. fleckeri venom. A. Venn diagram showing the numbers of potential toxin proteins identified in each MS/MS experiment. Abbreviations used, Mast. — nematocyst sample containing predominantly mastigophores; Iso. — nematocyst sample containing predominantly isorhizas and trirhopaloids; Total (IG) — total nematocyst sample fractionated using SDS-PAGE; and Total (OG) — total nematocyst sample fractionated using peptide OFFGEL electrophoresis; B. Venn diagram showing overlap in significant peptide identifications in three additional databases searches using MS/MS data. The databases depicted are 1.) Oases — predicted protein dataset from Oases assembly; 2.) Trinity — predicted dataset Trinity assembly; 3.) Cnidaria — all cnidarian proteins from the GenBank non-redundant protein database; and 4.) SwissProt — the Uniprot SwissProt database; C. Proteins identified in the venom using MS/MS that had been previously identified as potential toxins during the analysis of the transcriptome; D. GO terms associated with proteins identified in the venom of C. fleckeri using MS/MS.