Table 1.
Summary of assembly and annotation of nucleotide sequence data from Chironex fleckeri tentacle tissue
| Assembly | |
|---|---|
| Raw reads (paired-end) | 43,150,858 |
| After clipping and QC | 23,370,860 |
| Contigs | 34,438 |
| Average length ± SD | 1,056 ± 1359 |
| Length min - max | 100-26,403 |
| % GC content | 38.88 |
| Raw reads mapped to contigs | 13,052,970 (56%) |
| ORFs | |
| Transcripts with signficant BLAST hit (10e-5) | 13736 (40%) |
| Containing an Open Reading frame | 20,548 (60%) |
| With homologues in: | |
| Nematostella vectensis | 12,143 (35%) |
| GenBank nr proteins (Cnidaria) | 13,035 (38%) |
| Hydra magnipapillata | 11,681 (34%) |
| SwissProt | 11,123 (32%) |
| UniProt venom and toxins database | 455 (1%) |
| Matching CEGMA core eukaryotic proteins | |
| % Full length (>90% cover) | 77.02 |
| % Partial (<90% cover) | 80.65 |
| Interproscan | |
| Returning Pfam terms | 10,653 (31%) |
| Returning GO terms | 7,208 (21%) |
| Total GO terms | 17203 |
| Biological Process | 5,060 |
| Cellular Component | 2,745 |
| Molecular Function | 9,398 |
| Signal sequence and transmembrane domains | |
| Predicted proteins with signal sequences | 930 (3%) |
| Predicted proteins with > = 2 transmembrane domains | 1,332 (4%) |