| G-A base pair |
4.026 |
1.408 |
2.455 |
1.408 |
1.408 |
| Fragment with G/G and G/A pairs, SRP helix VI |
13.910 |
6.073 |
6.073 |
6.073 |
5.267 |
| Helix with A/C base pairs |
2.414 |
3.262 |
5.410 |
5.866 |
2.414 |
| Four-way junction, HCV IRES |
21.236 |
21.236 |
21.526 |
20.067 |
15.040 |
| Loop 8, A-type Ribonuclease P |
8.421 |
4.290 |
4.290 |
4.290 |
1.615 |
| Helix with U/C base pairs |
6.012 |
3.136 |
3.136 |
3.136 |
3.136 |
| Curved helix with G/A and A/A base pairs |
1.062 |
1.929 |
3.565 |
1.929 |
0.998 |
| Pre-catalytic conformation, hammerhead ribozyme |
30.097 |
12.830 |
12.830 |
12.830 |
12.830 |
| Loop E motif, 5S RNA |
2.404 |
2.561 |
2.561 |
2.561 |
1.986 |
| UUCG tetraloop |
1.284 |
1.278 |
1.403 |
1.278 |
1.278 |
| Rev response element high affinity site |
7.802 |
5.826 |
4.227 |
5.826 |
4.227 |
| Fragment with A/C pairs, SRP helix VI |
3.930 |
2.424 |
2.424 |
2.424 |
2.424 |
| Signal recognition particle Domain IV |
5.516 |
3.224 |
3.224 |
3.224 |
1.338 |
| Bulged G motif, sarcin/ricin loop |
1.902 |
7.066 |
7.838 |
7.066 |
1.588 |
| Tertiary interaction, hammerhead ribozyme |
25.215 |
24.647 |
24.647 |
24.647 |
19.453 |
| GAGA tetraloop from sarcin/ricin loop |
1.075 |
0.956 |
0.956 |
0.956 |
0.956 |
| Pentaloop from conserved region of SARS genome |
4.147 |
4.145 |
4.147 |
4.145 |
1.068 |
| L2/L3 tertiary interaction, purine riboswitch |
16.371 |
19.160 |
19.160 |
19.160 |
16.371 |
| L3, thiamine pyrophosphate riboswitch |
6.076 |
2.262 |
2.262 |
2.262 |
2.262 |
| Kink-turn motif from SAM-I riboswitch |
1.592 |
13.086 |
12.107 |
12.107 |
1.454 |
| Active site, hammerhead ribozyme |
20.394 |
23.413 |
22.927 |
22.927 |
17.947 |
| P1/L3, SAM-II riboswitch |
14.885 |
18.103 |
10.478 |
18.174 |
10.478 |
| J4/5 from P4-P6 domain, Tetrahymena ribozyme |
2.504 |
2.919 |
2.919 |
2.919 |
2.199 |
| Stem C internal loop, L1 ligase |
3.479 |
3.479 |
3.226 |
3.479 |
3.226 |
| J5/5a hinge, P4–P6 domain, Tetr. ribozyme |
25.063 |
23.920 |
28.689 |
23.920 |
20.910 |
| Three-way junction, purine riboswitch |
13.693 |
13.734 |
10.616 |
10.616 |
10.387 |
| J4a/4b region, metal-sensing riboswitch |
6.237 |
5.012 |
6.549 |
5.012 |
5.012 |
| Kink-turn motif |
15.0735 |
23.997 |
28.729 |
16.805 |
11.695 |
| Tetraloop/helix interaction, L1 ligase crystal |
1.398 |
0.948 |
1.398 |
0.948 |
0.948 |
| Hook-turn motif |
7.598 |
16.240 |
15.354 |
1.985 |
1.985 |
| Tetraloop/receptor, P4-P6 domain, Tetr. ribozyme |
16.803 |
11.112 |
4.477 |
4.477 |
3.818 |
| Pseudoknot, domain III, CPV IRES |
10.097 |
7.063 |
7.771 |
4.377 |
4.274 |
