Table 2. Dissociation constants for LSD1 complex binding to nucleosomes with different length extranucleosomal DNA at 50 mM NaCl.
Label position | DNA length | Histones | DNA format | Kd (nM) | Relative to 147 bp |
---|---|---|---|---|---|
H3 K27C | 147 | WT | 1 + 145 + 1 | 1641 ± 211 | 1.0 |
151 | WT | 3 + 145 + 3 | 716 ± 100 | 2.3 | |
155 | WT | 5 + 145 + 5 | 419 ± 23 | 3.9 | |
157 | WT | 6 + 145 + 6 | 470 ± 64 | 3.5 | |
159 | WT | 7 + 145 + 7 | 236 ± 40 | 7.0 | |
161 | WT | 8 + 145 + 8 | 232 ± 29 | 7.1 | |
163 | WT | 9 + 145 + 9 | 237 ± 22 | 6.9 | |
165 | WT | 10 + 145 + 10 | 205 ± 26 | 8.0 | |
169 | WT | 12 + 145 + 12 | 282 ± 68 | 5.8 | |
177 | WT | 16 + 145 + 16 | 214 ± 35 | 7.7 | |
181 | WT | 18 + 145 + 18 | 100 ± 27 | 16.2 | |
185 | WT | 20 + 145 + 20 | 135 ± 27 | 12.1 | |
207 | WT | 31 + 145 + 31 | 263 ± 27 | 6.2 | |
151L | WT | 5 + 145 + 1 | 718 ± 31 | 2.3 | |
161L | WT | 15 + 145 + 1 | 406 ± 52 | 4.0 | |
177L | WT | 31 + 145 + 1 | 769 ± 174 | 2.1 | |
177 | Acidic patch mutation | 16 + 145 + 16 | 98 ± 27 | 16.7 | |
H3 A21C | 147 | WT | 1 + 145 + 1 | 81.0 ± 9.0 | 1.0 |
157 | WT | 6 + 145 + 6 | 17.6 ± 1.9 | 4.6 | |
181 | WT | 18 + 145 + 18 | 3.8 ± 1.1 | 21.4 | |
207 | WT | 31 + 145 + 31 | 3.0 ± 1.3 | 27.2 |