Table 2. Similarity among eEF1B subunits in Capsicum annuum at the amino acid level.
eEF1B subunits | α-subunit (AY480020) 1 | β-subunit (PGAv.1.5.scaffold100) 2 | β-subunit (PGAv.1.5.scaffold1125) 2 | γ-subunit (PGAv.1.5.scaffold117) 2 | γ-subunit (PGAv.1.5.scaffold546) 2 | |||||
---|---|---|---|---|---|---|---|---|---|---|
Coverage (%) | Similarity (%) | Coverage (%) | Similarity (%) | Coverage (%) | Similarity (%) | Coverage (%) | Similarity (%) | Coverage (%) | Similarity (%) | |
α-subunit (AY480020) 1 | - | - | 81 | 57 | 81 | 59 | 12 | 38 | 22 | 25 |
β-subunit (PGAv.1.5.scaffold100) 2 | - | - | - | - | 100 | 91 | none | none | none | none |
β-subunit (PGAv.1.5.scaffold1125) 2 | - | - | - | - | - | - | none | none | none | none |
γ-subunit (PGAv.1.5.scaffold117) 2 | - | - | - | - | - | - | - | - | 100 | 78 |
γ-subunit (PGAv.1.5.scaffold546) 2 | - | - | - | - | - | - | - | - | - | - |
1Full length sequence of eEF1Bα was obtained from C. annuum ‘ECW’ by 3’RACE-PCR based on the partial sequences of NCBI gene bank (AY480020).
2Sequences of C. annuum eEF1Bβ and eEF1Bγ were obtained from pepper genome database (http://peppergenome.snu.ac.kr, v1.5 SCAFFO