TABLE 2.
SNP characteristics among BetaGene and IRASFS participants
| Chromosome | kb Position* | Reference allele† | Reference allele frequency‡
|
|||
|---|---|---|---|---|---|---|
| BetaGene | IRASFS
|
|||||
| San Antonio | San Luis Valley | |||||
| PPARG2 | ||||||
| Pro12Ala (rs1801282) | 3 | 12368125 | Ala | 0.103 | 0.118 | 0.100 |
| HNF4A | ||||||
| rs4810424 | 20 | 42408437 | C | 0.500 | 0.459 | 0.481 |
| rs1884613 | 20 | 42413829 | G | 0.501 | 0.451 | 0.481 |
| rs1884614 | 20 | 42413933 | T | 0.499 | 0.456 | 0.481 |
| rs2144908 | 20 | 42419131 | A | 0.503 | 0.453 | 0.472 |
| rs6031551 | 20 | 42423128 | C | 0.116 | — | — |
| rs6031552 | 20 | 42423208 | A | 0.107 | — | — |
| rs2425637 | 20 | 42457463 | T | 0.608 | 0.640 | 0.622 |
| rs2425640 | 20 | 42461451 | A | 0.202 | 0.139 | 0.149 |
| rs1885088 | 20 | 42472454 | A | 0.199 | 0.169 | 0.238 |
*
Based on National Center for Biotechnology Information build 36.1.
†
Minor allele for Finns in FUSION (16).
‡
Allele frequency of BetaGene reference allele.