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. 2004 Jul;70(7):4230–4241. doi: 10.1128/AEM.70.7.4230-4241.2004

TABLE 3.

Phylogenetic and gamma radiation resistance characteristics of isolates from contaminated (SX-108 slant borehole) and uncontaminated (299-W22-48) Hanford vadose sediments

Core identity and sediment Isolate identity Nearest GenBank relative SimRank Accession no. Dosea (kGy) % Irradiation survival
SX-108
    1a 1b-1 Arthrobacter globiformis 0.982 AY561524 2.5 0.24
1c-1 Arthrobacter sp. strain CF-46 0.970 AY561525 2.5 2.4 × 10−4
1c-2 A. globiformis 0.967 AY561526 2.5 9.4 × 10−3
    4a 4a-1 Rhodococcus fascians 0.988 AY561527
4a-2 Clavibacter michiganense 0.816 AY561528
4a-3 Microbacterium oxydans 0.946 AY561529 2.5 0
4a-4 Nocardia corynebacteroides 0.991 AY561530 2.5 0
4b-1 N. corynebacteroides 0.983 AY561531 2.5 0
4b-2 Staphylococcus warneri 0.988 AY561532
4b-3 Nocardioides plantarum 0.907 AY561533
4c-1 N. plantarum 0.913 AY561534
    5a 5L-1 Arthrobacter agilis 0.967 AY561535 2.5 2.5 × 10−4
5L-2 Agrococcus jenensis 0.939 AY561536 2.5 1.1 × 10−3
5L-3 Bacillus licheniformis 0.977 AY561537 2.5 0
    7a 7b-1 D. radiodurans 0.980 AY561538 20 0.21
7c-1 D. radiodurans 0.978 AY561539 20 2.4 × 10−2
7L-1 M. luteus 0.942 AY561540 2.5 0.86
    8a 8c-1 Unnamed β-Proteobacterium 0.871 AY561542 2.5 0
8b-1 Sphingomonas asaccharolytica 0.968 AY561541
    9a 9c-3 Unnamed α-Proteobacterium 0.966 AY561544 2.5 0
9c-2 Arthrobacter sp. strain CF-46 0.991 AY561543
9c-4 Dermabacter hominis 0.966 AY561545
9c-5 Verrucosispora gifhornensis 0.904 AY561546
    10a 10c-1 γ-Proteobacterial clone G21 0.929 AY561547 2.5 1.7 × 10−3
10c-2 Unnamed α-Proteobacterium 0.877 AY561548 2.5 0
    12a 12a-1 P. stutzeri 0.997 AY561549
12b-1 P. stutzeri 0.994 AY561550 2.5 0
    15a 15a-1 Terrabacter tumescens 0.948 AY561551
15c-1 Azospirillum lipoferum 0.855 AY561552 2.5 0
    16a 16b-1 Staphylococcus pasteuri 0.986 AY561553 2.5 4.1 × 10−2
16b-2 S. warneri 0.981 AY561554
16b-4 A. globiformis 0.969 AY561555
16b-5A S. warneri 0.999 AY561556
16b-5B S. warneri 0.989 AY561557
16c-1a A. globiformis 0.973 AY561558
    17a 17a-1 Arthrobacter nicotinovorans 0.960 AY561559 2.5 5.6 × 10−3
17a-2 Arthrobacter sp. strain CF-46 0.959 AY561560 2.5 3.5 × 10−2
17a-3 P. stutzeri 0.994 AY561561 2.5 0
17a-4 P. stutzeri 0.990 AY561562
17a-5 Streptomyces sampsonii 0.932 AY561563
17b-1 Arthrobacter sp. strain CF-46 0.909 AY561564 2.5 6.7 × 10−4
17b-2 Pseudomonas sp. strain BRW1 0.998 AY561565
17c-1 Arthrobacter sp. strain CF-46 0.939 AY561566 2.5 0
17c-2 Pseudomonas sp. strain BRW1 0.998 AY561567
299-W22-48
    RG1 RG-1 Arthrobacter sp. strain CF-46 0.970 AY561568
RG-2 Janibacter limosus 0.858 AY561569
RG-3 Variovorax sp. strain WFF52 0.927 AY561570
RG-4 Variovorax sp. strain WFF52 0.931 AY561571
RG-5 Arthrobacter sp. strain S2215 0.947 AY561572
RG-6 Mycobacterium hodleri 0.909 AY561573
RG-7 M. hodleri 0.908 AY561574 5 8.8 × 10−4
RG-9 Terrabacter sp. strain DPO 1361 0.840 AY561575
RG-59 A. globiformis 0.928 AY561618
RG-60 Alcaligenes sp. strain 05-51 0.803 AY561619
RG-61 A. globiformis 0.936 AY561620
    RG4 RG-10 Streptomyces sp. strain 254 0.936 AY561576
RG-11 γ-Proteobacterial clone JAP412 0.973 AY561577
RG-12 Arthrobacter sp. strain AC-48 0.905 AY561578
RG-13 Arthrobacter sp. strain S22215 0.951 AY561579
RG-14 R. fascians 0.965 AY561580
RG-15 A. agilis 0.952 AY561581
RG-16 Unnamed β-Proteobacterium 0.865 AY561582
RG-17 Bradyrhizobium sp. strain BDV 5840 0.874 AY561583
RG-18 Unnamed β-Proteobacterium 0.865 AY561584
RG-19 Unnamed β-Proteobacterium 0.867 AY561585
RG-20 Detolaasinbacter tsukamotoae 0.798 AY561586 2.5 0
RG-21 γ-Proteobacterial clone JAP412 0.964 AY561587
RG-22 Arthrobacter sp. strain S22215 0.958 AY561588
RG-23 Arthrobacter oxydans 0.948 AY561589
RG-24 Arthrobacter sp. strain S22215 0.958 AY561590
RG-67 Stenotrophomonas maltophilia 0.964 AY561626 2.5 0
RG-68 S. maltophilia 0.965 AY561627 2.5 0
    RG1-10kGyb RG-25 Staphylococcus epidermidis 0.985 AY561591 2.5 2.6 × 10−2
RG-26 Brevibacillus agri 0.965 AY561592 2.5 0
RG-64 M. luteus 0.960 AY561623 5 0.44
RG-65 M. luteus 0.896 AY561624 5 0.51
RG-66 Arthrobacter ramosus 0.955 AY561625
    RG1-des RG-62 A. ramosus 0.918 AY561621
RG-63 Microbacterium oxydans 0.939 AY561622
RG-69 Pseudomonas migulae 0.958 AY561628 2.5 0
RG-70 P. migulae 0.957 AY561629 2.5 0
    RG4-10kGyb RG-29 M. luteus 0.955 AY561593 5 0.46
RG-30 Brevibacillus agri 0.955 AY561594 2.5 0
RG-71 M. oxydans 0.940 AY561630
RG-72 Arthrobacter sp. strain CF-46 0.919 AY561631
RG-72A Arthrobacter sp. strain S21004 0.932 AY561632
RG-73 Arthrobacter sp. strain CF-46 0.922 AY561633
    RG4-des RG-33 A. oxydans 0.958 AY561595
RG-34 Streptomyces griseus 0.936 AY561596
RG-35 Arthrobacter sp. strain CF-46 0.933 AY561597
RG-36 Streptomyces setonii 0.888 AY561598
RG-37 Pseudomonas migulae 0.943 AY561599 2.5 0
RG-38 Arthrobacter sp. strain CF-46 0.941 AY561600
RG-39 Arthrobacter globiformis 0.987 AY561601
RG-40 C. michiganense 0.778 AY561602
RG-43 Arthrobacter sp. strain 19B 0.953 AY561603 2.5 1.9 × 10−4
RG-45 Arthrobacter sp. strain S21004 0.947 AY561604 2.5 3.1 × 10−2
RG-46 Unnamed β-Proteobacterium 0.863 AY561605
RG-47 Streptomyces sp. strain 254 0.944 AY561606
RG-48 Rhodococcus sp. 0.922 AY561607
RG-49 A. agilis 0.975 AY561608
RG-50 Rhodococcus sp. 0.939 AY561609 2.5 0
RG-51 Streptomyces sp. strain 254 0.920 AY561610
RG-52 Unnamed β-Proteobacterium 0.912 AY561611
RG-53 Arthrobacter sp. strain 19B 0.948 AY561612
RG-54 A. agilis 0.921 AY561613
RG-55 Arthrobacter sp. strain CF-46 0.985 AY561614
RG-56 Arthrobacter sp. strain 19B 0.968 AY561615
RG-57 Pseudomonas migulae 0.973 AY561616 2.5 0
RG-58 Arthrobacter sp. strain 19B 0.946 AY561617
a

Dose to cultures provided via 60Co irradiator.

b

Before plating, sediment was subjected to 10 kGy of gamma radiation from a 60Co source.