TABLE 4.
Phylogenetic association of clones from vadose sediments recovered from the SX-108 slant borehole
| Core identity | Clone | Nearest GenBank relative | Identitya (%) | Accession no. |
|---|---|---|---|---|
| 3a | RAY457.x1 | Bacillus sp. strain YY | 719/723 (99) | AY579781 |
| RAY473.x1 | Unidentified eubacterium clone BSV05 from anoxic soil (likely Bacillus) | 720/726 (99) | AY579782 | |
| RAY479.x1 | Uncultured soil bacterium clone 432-1 (likely Bacillus) | 735/753 (97) | AY579783 | |
| RAY516.x1 | Achromobacter xylosoxidans strain 2002-55549 | 729/729 (100) | AY579784 | |
| RAY554.x1 | Uncultured bacterium clone 623-1 (likely Arthrobacter) | 756/760 (99) | AY579785 | |
| RAY592.x1 | Arthrobacter sp. strain SMCC G968 | 593/600 (98) | AY579787 | |
| RAY651.x1 | Bacterium strain LMG 18435 (likely Bacillus) | 736/741 (99) | AY579788 | |
| RAY690.x1 | Bacterium K2-24 (likely Bacillus) | 543/553 (98) | AY579789 | |
| 5a | RAZ387.x1 | Methylobacterium extorquens ATCC14718 | 693/693 (100) | AY579790 |
| RAZ409.y1 | Nocardioides plantarum DSM 11054T | 612/621 (98) | AY579791 | |
| 6a | RBA441.y1 | Taxeobacter sp. strain SAFR-033 | 632/675 (93) | AY579792 |
| RBA464.x1 | Achromobacter xylosoxidans CIP 7132t | 652/654 (99) | AY579793 | |
| RBA468.y1 | β-Proteobacterium A0647 | 663/703 (94) | AY579794 | |
| RBA471.y1 | Sphingomonas phyllosphaerae FA2 | 740/741 (99) | AY579795 | |
| RBA480.y1 | Methylobacterium extorquens ATCC14718 | 563/563 (100) | AY579796 | |
| RBA484.y1 | Uncultured Alcaligenes sp. clone ON5 or Bordetella hinzii | 620/625 (99) | AY579797 | |
| RBA486.x1 | Bacterium strain 86356 (likely Sphingomonas) | 620/627 (98) | AY579798 | |
| RBA505.x1 | Uncultured β-Proteobacterium clone pA42B412 | 638/638 (100) | AY579799 | |
| RBA669.x1 | Uncultured bacterium clone cvf122070 (CFB group) | 578/582 (99) | AY579800 | |
| RBA761.y1 | Sphingomonas paucimobilis ATCC 29837 | 431/440 (97) | AY579801 | |
| 12a | RBB389.x1 | Achromobacter xylosoxidans strain 2002-55549 | 710/713 (99) | AY579802 |
| RBB392.y1 | Streptomyces sp. strain KN-1220 | 598/603 (99) | AY579803 | |
| RBB399.y1 | Streptomyces sp. strain VTT E-99-1326 (A4) | 711/711 (100) | AY579804 | |
| RBB431.x1 | Saccharothrix tangerinus strain MK27-91F2 | 623/625 (99) | AY579805 | |
| RBB518.x1 | P. stutzeri strain ASK-1 | 657/657 (100) | AY579806 | |
| RBB541.y1 | A. globiformis JCM 1332 | 361/362 (99) | AY579807 | |
| RBB579.x1 | S. paucimobilis strain ATCC 29837 | 652/753 (99) | AY579808 | |
| RBB612.x1 | A. agilis strain WED2.2 | 705/705 (100) | AY579809 | |
| RBB674.y1 | Arthrobacter sp. strain Fa21 | 538/549 (97) | AY579810 | |
| RBB697.x1 | Nocardiodes sp. strain NCFB3005 or Aeromicrobium sp. strain GWS-BW-H252 | 604/614 (98) | AY579811 | |
| RBB732.x1 | Stenotrophomonas maltophilia strain 6B2-1 | 621/624 (99) | AY579812 | |
| 17a | RBC394.x1 | Arthrobacter sp. strain pfB10 | 547/554 (98) | AY579813 |
| RBC400.x1 | Arthrobacter sp. strain 19503 | 717/717 (100) | AY579814 | |
| RBC407.x1 | Geodermatophilus sp. strain 4S | 594/607 (97) | AY579815 | |
| RBC412.y1 | Kocuria erythromyxa ATCC 187T | 565/568 (99) | AY579816 | |
| RBC413.y1 | Achromobacter xylosoxidans strain 2002-55549 | 676/676 (100) | AY579817 | |
| RBC423.y1 | Uncultured earthworm cast bacterium clone c276 (likely Amycolatopsis) | 661/681 (97) | AY579818 | |
| RBC435.x1 | Uncultured actinobacterium clone APe4_57 (likely Arthrobacter) | 663/666 (99) | AY579819 | |
| RBC437.x1 | Uncultured actinobacterium clone APe4_57 (likely Actinobispora) | 597/606 (98) | AY579820 | |
| RBC439.x1 | Nocardioides sp. strain NCFB3007 | 646/651 (99) | AY579821 | |
| RBC450.x1 | Arthrobacter crystallopoietes DSM 20117 | 555/564 (98) | AY579822 | |
| RBC489.x1 | P. stutzeri strain ASK-1 | 675/676 (99) | AY579823 | |
| RBC620.x1 | Blastococcus aggregatus strain DSM 4725T | 562/566 (99) | AY579824 | |
| RBC630.x1 | Arthrobacter sp. strain An5 | 632/632 (100) | AY579825 | |
| RBC645.x1 | A. agilis strain WED2.2 | 666/666 (100) | AY579826 | |
| RBC716.x1 | Streptococcus sanguis ATCC 10556 | 611/614 (99) | AY579827 | |
| RBC738.x1 | Phenanthrene-degrading bacterium 70-2 (likely Janthinobacterium) | 661/673 (98) | AY579828 | |
| RBC759.x1 | Arthrobacter aurescens | 685/688 (99) | AY579829 |
a
Nucleotides identical to nearest Genbank relative/total nucleotides of clone sequence.