Table 1.
Gene-only path length
Prior connections | p <0.05 (uncorrected) Path length | p <0.05 (Bonf.) Path length | FDR <0.05 Path length | |||||
---|---|---|---|---|---|---|---|---|
0 | 1 | 2 | 3 | 5 | Inf | 1 | 1 | |
165 true | - | 166 | 1 | - | - | 1 | 165 | 165 |
414 true | - | 414 | - | - | - | 2 | 414 | 414 |
828 true | - | 829 | 7 | 1 | - | 4 | 828 | 828 |
1242 true | 1 | 1243 | 3 | - | 1 | 5 | 1242 | 1242 |
1656 true | - | 1656 | 2 | - | - | 3 | 1656 | 1656 |
Path length of significant interactions confirmed by PANDA on the gene-only regulatory network with different amounts of correct prior information.