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. 2015 Jun;25(6):918–925. doi: 10.1101/gr.176552.114

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© 2015 Jun et al.; Published by Cold Spring Harbor Laboratory Press

This article is distributed exclusively by Cold Spring Harbor Laboratory Press for the first six months after the full-issue publication date (see http://genome.cshlp.org/site/misc/terms.xhtml). After six months, it is available under a Creative Commons License (Attribution-NonCommercial 4.0 International), as described at http://creativecommons.org/licenses/by-nc/4.0/.

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Figure 7. — Nonreference genotype concordance for low-pass genome data calculated using Omni2.5 array genotypes. The haplotype-aware refinement steps significantly improve genotype accuracy, especially with larger sample sizes.