Table 3.
Characteristics of WT1 SNPs selected in the case-control study
Gene | SNP | Chr. | SNP Property | Allele | P for HWEa | MAF | |||
---|---|---|---|---|---|---|---|---|---|
| |||||||||
Allele | Controls (%) | Cases (%) | CHBb (%) | ||||||
WT1 | rs16754 | 11 | exon7 | G/A | 0.1442 | A | 29.17 | 26.59 | 25.20 |
WT1 | rs3930513 | 11 | intron1 | T/G | 0.3464 | G | 26.84 | 24.33 | 22.10 |
WT1 | rs5030141 | 11 | intron1 | A/C | 0.3369 | C | 31.71 | 28.84 | 27.70 |
WT1 | rs5030317 | 11 | 3’-UTR | C/G | 0.1203 | G | 27.70 | 25.04 | 23.70 |
WT1 | rs5030320 | 11 | 3’-UTR | G/A | 0.0826 | A | 27.70 | 24.96 | 23.20 |
HWE: Hardy Weinberg Equilibrium; MAF: minimal allele frequency;
goodness-of-fit chi-square test for HWE for genotype distribution in controls.
Chinese Han in Beijing, data from http://hapmap.ncbi.nlm.nih.gov/.